DRSC/TRiP Functional Genomics Resources

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Protein Alignment wor and snai1

DIOPT Version :10

Sequence 1:NP_476601.1 Gene:wor / 34906 FlyBaseID:FBgn0001983 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_989267.1 Gene:snai1 / 394880 XenbaseID:XB-GENE-479970 Length:262 Species:Xenopus tropicalis


Alignment Length:195 Identity:117/195 - (60%)
Similarity:139/195 - (71%) Gaps:14/195 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 EYK---IIRSQPGGSGAIVDQTEFCT--DQASALIQAANVASAQSMQKPVGVPRYHCQDCGKSYS 355
            :||   |..|....|...:|.|.|.:  |:........:.||:.:..:     ::.|..|.||||
 Frog    73 DYKKSPISPSSSDDSSKPLDLTSFSSEDDEGGKTSDPPSPASSATEAE-----KFQCNQCSKSYS 132

  Fly   356 TYSGLSKHQQFHCPSAEGNQVKKVFSCKNCDKTYVSLGALKMHIRTHTLPCKCPICGKAFSRPWL 420
            |::|||||:|.||.|    |.:|.||||.|:|.||||||||||||:|||||.|.|||||||||||
 Frog   133 TFAGLSKHKQLHCDS----QARKSFSCKYCEKEYVSLGALKMHIRSHTLPCVCKICGKAFSRPWL 193

  Fly   421 LQGHIRTHTGEKPFSCQHCNRAFADRSNLRAHMQTHSDVKKYSCPTCTKSFSRMSLLAKHLQSGC 485
            ||||||||||||||||.|||||||||||||||:|||||||||.|..|:::|||||||.||.::||
 Frog   194 LQGHIRTHTGEKPFSCTHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSRTFSRMSLLHKHEETGC 258

  Fly   486  485
             Frog   259  258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
worNP_476601.1 C2H2 Zn finger 270..290 CDD:275368
C2H2 Zn finger 317..334 CDD:275368 3/18 (17%)
zf-C2H2 345..367 CDD:395048 13/21 (62%)
C2H2 Zn finger 347..367 CDD:275368 13/19 (68%)
zf-C2H2 380..402 CDD:395048 18/21 (86%)
C2H2 Zn finger 382..402 CDD:275368 16/19 (84%)
zf-C2H2 406..428 CDD:395048 19/21 (90%)
C2H2 Zn finger 408..428 CDD:275368 18/19 (95%)
zf-C2H2 434..456 CDD:395048 19/21 (90%)
C2H2 Zn finger 436..456 CDD:275368 17/19 (89%)
C2H2 Zn finger 464..481 CDD:275368 10/16 (63%)
snai1NP_989267.1 DUF4764 <97..>156 CDD:464955 23/67 (34%)
C2H2 Zn finger 124..144 CDD:275370 13/19 (68%)
C2H2 Zn finger 155..175 CDD:275368 16/19 (84%)
zf-C2H2 179..201 CDD:395048 19/21 (90%)
C2H2 Zn finger 181..201 CDD:275368 18/19 (95%)
zf-H2C2_2 194..217 CDD:463886 21/22 (95%)
zf-C2H2 207..229 CDD:395048 19/21 (90%)
C2H2 Zn finger 209..229 CDD:275368 17/19 (89%)
C2H2 Zn finger 237..253 CDD:275368 9/15 (60%)
Blue background indicates that the domain is not in the aligned region.

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