DRSC/TRiP Functional Genomics Resources

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Protein Alignment wor and Scrt1

DIOPT Version :10

Sequence 1:NP_476601.1 Gene:wor / 34906 FlyBaseID:FBgn0001983 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_001124042.1 Gene:Scrt1 / 366951 RGDID:1306236 Length:348 Species:Rattus norvegicus


Alignment Length:373 Identity:117/373 - (31%)
Similarity:158/373 - (42%) Gaps:103/373 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 YTRDASPTIIKAEPSDEEQFPLRNYNNNLLKSIAEYEDCMKMQNIKEEIPPIPSPQLFYPPPTPL 202
            |..||...::|. ||.|..:...                     ::.|:.|..|...  ||||| 
  Rat    51 YDGDAEAALLKG-PSPEPMYAAA---------------------VRGELGPAASGSA--PPPTP- 90

  Fly   203 AEPE-----------DLSVTQRRV-----LSENMNLQNVARALLSMQHMAPQHAPPPIDMEEDQE 251
             .||           |.:|::...     :::..:.:..|.|..:........|.|      |.:
  Rat    91 -RPELATAAGGYINGDAAVSEGYAADAFFITDGRSRRKAANANAASAPSTASVAAP------DSD 148

  Fly   252 NQDINQLKIKSSNDLYYQCQQCNKCYATYAGLVKHQQTHAYESTEYKIIRSQPGGSGAIVDQTEF 316
            .........:.|.                :|......|.....||   .|:.||.:||       
  Rat   149 AGGGGGPGTRGSG----------------SGSASRGGTRVGAGTE---ARAGPGATGA------- 187

  Fly   317 CTDQASALIQAANVASAQSMQKPVGVPRYHCQDCGKSYSTYSGLSKHQQFHCPSAEGNQVKKVFS 381
                                     ..|:.|.:|||:|:|.|.||:|:|.| .|.:....::   
  Rat   188 -------------------------GGRHACGECGKTYATSSNLSRHKQTH-RSLDSQLARR--- 223

  Fly   382 CKNCDKTYVSLGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFADR 446
            |..|.|.|||:.|:.||:.||.|..||.:||||||||||||||:|:|||||||.|.||.:|||||
  Rat   224 CPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADR 288

  Fly   447 SNLRAHMQTHSDVKKYSCPTCTKSFSRMSLLAKHLQSGCQTEQSGGPS 494
            |||||||||||..|.:.|..|.|||:..|.|.||.:|.|....:.||:
  Rat   289 SNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGASGPA 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
worNP_476601.1 C2H2 Zn finger 270..290 CDD:275368 1/19 (5%)
C2H2 Zn finger 317..334 CDD:275368 0/16 (0%)
zf-C2H2 345..367 CDD:395048 11/21 (52%)
C2H2 Zn finger 347..367 CDD:275368 11/19 (58%)
zf-C2H2 380..402 CDD:395048 9/21 (43%)
C2H2 Zn finger 382..402 CDD:275368 9/19 (47%)
zf-C2H2 406..428 CDD:395048 17/21 (81%)
C2H2 Zn finger 408..428 CDD:275368 16/19 (84%)
zf-C2H2 434..456 CDD:395048 17/21 (81%)
C2H2 Zn finger 436..456 CDD:275368 16/19 (84%)
C2H2 Zn finger 464..481 CDD:275368 8/16 (50%)
Scrt1NP_001124042.1 C2H2 Zn finger 193..213 CDD:275368 11/19 (58%)
C2H2 Zn finger 224..241 CDD:275371 8/16 (50%)
COG5048 <245..>313 CDD:227381 48/67 (72%)
C2H2 Zn finger 250..270 CDD:275368 16/19 (84%)
C2H2 Zn finger 278..298 CDD:275368 16/19 (84%)
C2H2 Zn finger 306..322 CDD:275368 7/15 (47%)

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