DRSC/TRiP Functional Genomics Resources

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Protein Alignment wor and Scrt2

DIOPT Version :9

Sequence 1:NP_476601.1 Gene:wor / 34906 FlyBaseID:FBgn0001983 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_001178834.1 Gene:Scrt2 / 366229 RGDID:1564796 Length:305 Species:Rattus norvegicus


Alignment Length:158 Identity:87/158 - (55%)
Similarity:106/158 - (67%) Gaps:8/158 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   341 GVPRYHCQDCGKSYSTYSGLSKHQQFHCPSAEGNQVKKVFSCKNCDKTYVSLGALKMHIRTHTLP 405
            |..|:.|.:|||:|:|.|.||:|:|.| .|.:....:|   |..|.|.|||:.||.||:.||.|.
  Rat   151 GGHRHACAECGKTYATSSNLSRHKQTH-RSLDSQLARK---CPTCGKAYVSMPALAMHVLTHNLR 211

  Fly   406 CKCPICGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFADRSNLRAHMQTHSDVKKYSCPTCTKS 470
            .||.:||||||||||||||:|:|||||||.|.||.:||||||||||||||||..|.|.|..|.||
  Rat   212 HKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKS 276

  Fly   471 FSRMSLLAKHLQSGC----QTEQSGGPS 494
            |:..|.|.||.::.|    :...|.||:
  Rat   277 FALKSYLHKHCEAACVKAAEPPPSAGPA 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
worNP_476601.1 C2H2 Zn finger 270..290 CDD:275368
C2H2 Zn finger 317..334 CDD:275368
zf-C2H2 345..367 CDD:278523 11/21 (52%)
C2H2 Zn finger 347..367 CDD:275368 11/19 (58%)
PHA00732 379..>417 CDD:177300 20/37 (54%)
C2H2 Zn finger 382..402 CDD:275368 10/19 (53%)
zf-C2H2_8 405..482 CDD:292531 54/76 (71%)
zf-C2H2 406..428 CDD:278523 17/21 (81%)
C2H2 Zn finger 408..428 CDD:275368 16/19 (84%)
zf-H2C2_2 421..444 CDD:290200 16/22 (73%)
zf-C2H2 434..456 CDD:278523 17/21 (81%)
C2H2 Zn finger 436..456 CDD:275368 16/19 (84%)
zf-H2C2_2 448..473 CDD:290200 17/24 (71%)
C2H2 Zn finger 464..481 CDD:275368 8/16 (50%)
Scrt2NP_001178834.1 C2H2 Zn finger 157..177 CDD:275368 11/19 (58%)
COG5048 <210..>277 CDD:227381 49/66 (74%)
zf-C2H2 212..234 CDD:278523 17/21 (81%)
C2H2 Zn finger 214..234 CDD:275368 16/19 (84%)
zf-H2C2_2 227..250 CDD:290200 16/22 (73%)
C2H2 Zn finger 242..262 CDD:275368 16/19 (84%)
zf-C2H2 242..262 CDD:278523 16/19 (84%)
zf-H2C2_2 254..278 CDD:290200 16/23 (70%)
C2H2 Zn finger 270..286 CDD:275368 7/15 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 179 1.000 Inparanoid score I3910
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.860

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