DRSC/TRiP Functional Genomics Resources

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Protein Alignment wor and rgr

DIOPT Version :10

Sequence 1:NP_476601.1 Gene:wor / 34906 FlyBaseID:FBgn0001983 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_001163089.2 Gene:rgr / 35843 FlyBaseID:FBgn0267792 Length:889 Species:Drosophila melanogaster


Alignment Length:253 Identity:62/253 - (24%)
Similarity:102/253 - (40%) Gaps:45/253 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 NQDINQL--KIKSSNDLYYQCQQCNKCYATYAGLVKHQQTHAYESTEYKIIRSQPGGS------- 307
            :|.:.|:  :|.::....|..:|..|   |...|.|.     :.:.:.||:......|       
  Fly   620 SQALGQMLDEINTTFHTSYTAEQLEK---TLFNLRKE-----FSAQKRKILTESEDSSSIPLLHA 676

  Fly   308 --GAIVDQT------EFCTDQASALIQAANVASAQSMQKPVGVPRYHCQDCGKSYSTYSGLSKHQ 364
              ...:||.      :.|:|......|.....||....:|     :.|..|||.:.....|:.|.
  Fly   677 KLAEFLDQNLGPFRCDICSDLVKTCDQYKVHRSAHDGTQP-----FICTLCGKGFQMPCNLTVHI 736

  Fly   365 QFH---CPSAEGNQVKKVFSCKNCDKTYVSLGALKMHIRTHT--LPCKCPICGKAFSRPWLLQGH 424
            :.|   .|          :||:.|||.:.:...:.:|:||||  .|..|.:|||:|........|
  Fly   737 RRHRRDFP----------YSCEQCDKRFATSTEVAIHLRTHTGERPYICDLCGKSFKTWSFFDIH 791

  Fly   425 IRTHTGEKPFSCQHCNRAFADRSNLRAHMQTHSDVKKYSCPTCTKSFSRMSLLAKHLQ 482
            .|.|..:..|.|..|.:.|.:::....||.:|..::|:.|..|.|:|:....|.||.:
  Fly   792 RRRHLNQSTFHCPICAKGFYEKNRFTDHMNSHWAIRKHLCTVCGKTFTTYGNLKKHTE 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
worNP_476601.1 C2H2 Zn finger 270..290 CDD:275368 5/19 (26%)
C2H2 Zn finger 317..334 CDD:275368 4/16 (25%)
zf-C2H2 345..367 CDD:395048 6/21 (29%)
C2H2 Zn finger 347..367 CDD:275368 6/19 (32%)
zf-C2H2 380..402 CDD:395048 7/21 (33%)
C2H2 Zn finger 382..402 CDD:275368 6/19 (32%)
zf-C2H2 406..428 CDD:395048 7/21 (33%)
C2H2 Zn finger 408..428 CDD:275368 7/19 (37%)
zf-C2H2 434..456 CDD:395048 6/21 (29%)
C2H2 Zn finger 436..456 CDD:275368 5/19 (26%)
C2H2 Zn finger 464..481 CDD:275368 6/16 (38%)
rgrNP_001163089.2 MADF 334..425 CDD:214738
MADF 466..556 CDD:214738
MADF_DNA_bdg 595..682 CDD:463144 12/69 (17%)
C2H2 Zn finger 691..711 CDD:275368 4/19 (21%)
C2H2 Zn finger 719..739 CDD:275368 6/19 (32%)
COG5048 742..>824 CDD:227381 26/91 (29%)
C2H2 Zn finger 747..767 CDD:275368 6/19 (32%)
C2H2 Zn finger 775..795 CDD:275368 7/19 (37%)
C2H2 Zn finger 803..818 CDD:275368 3/14 (21%)
C2H2 Zn finger 831..851 CDD:275368 7/19 (37%)
C2H2 Zn finger 859..877 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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