DRSC/TRiP Functional Genomics Resources

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Protein Alignment wor and Snai3

DIOPT Version :9

Sequence 1:NP_476601.1 Gene:wor / 34906 FlyBaseID:FBgn0001983 Length:548 Species:Drosophila melanogaster
Sequence 2:XP_006531137.1 Gene:Snai3 / 30927 MGIID:1353563 Length:327 Species:Mus musculus


Alignment Length:140 Identity:83/140 - (59%)
Similarity:100/140 - (71%) Gaps:10/140 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   345 YHCQDCGKSYSTYSGLSKHQQFHCPSAEGNQVKKVFSCKNCDKTYVSLGALKMHIRTHTLPCKCP 409
            :.|..|.:.|.|.:||::|||.||....|    :.|:|:.|||.|.||||||||||||||||.|.
Mouse   147 FECIHCHRPYHTLAGLARHQQLHCHLPTG----RAFTCRYCDKEYASLGALKMHIRTHTLPCICK 207

  Fly   410 ICGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFADRSNLRAHMQTHSDVKKYS------CPTCT 468
            :|||||||||||||||||||||||::|.||:||||||||||||:|||...|||.      .|...
Mouse   208 VCGKAFSRPWLLQGHIRTHTGEKPYTCSHCSRAFADRSNLRAHLQTHVGTKKYRTGPSSLLPVSC 272

  Fly   469 KSFSRMSLLA 478
            ::.::.||.|
Mouse   273 QNQAQWSLRA 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
worNP_476601.1 C2H2 Zn finger 270..290 CDD:275368
C2H2 Zn finger 317..334 CDD:275368
zf-C2H2 345..367 CDD:278523 9/21 (43%)
C2H2 Zn finger 347..367 CDD:275368 9/19 (47%)
PHA00732 379..>417 CDD:177300 28/37 (76%)
C2H2 Zn finger 382..402 CDD:275368 15/19 (79%)
zf-C2H2_8 405..482 CDD:292531 51/80 (64%)
zf-C2H2 406..428 CDD:278523 18/21 (86%)
C2H2 Zn finger 408..428 CDD:275368 17/19 (89%)
zf-H2C2_2 421..444 CDD:290200 18/22 (82%)
zf-C2H2 434..456 CDD:278523 16/21 (76%)
C2H2 Zn finger 436..456 CDD:275368 16/19 (84%)
zf-H2C2_2 448..473 CDD:290200 12/30 (40%)
C2H2 Zn finger 464..481 CDD:275368 4/15 (27%)
Snai3XP_006531137.1 C2H2 Zn finger 149..169 CDD:275368 9/19 (47%)
C2H2 Zn finger 180..200 CDD:275368 15/19 (79%)
C2H2 Zn finger 206..226 CDD:275368 17/19 (89%)
zf-C2H2 206..226 CDD:333835 17/19 (89%)
zf-H2C2_2 219..242 CDD:372612 18/22 (82%)
zf-C2H2 232..254 CDD:333835 16/21 (76%)
C2H2 Zn finger 234..254 CDD:275368 16/19 (84%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850213
Domainoid 1 1.000 50 1.000 Domainoid score I11573
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8700
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X955
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.700

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