DRSC/TRiP Functional Genomics Resources

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Protein Alignment wor and Snai3

DIOPT Version :9

Sequence 1:NP_476601.1 Gene:wor / 34906 FlyBaseID:FBgn0001983 Length:548 Species:Drosophila melanogaster
Sequence 2:XP_008770833.1 Gene:Snai3 / 307919 RGDID:1309658 Length:328 Species:Rattus norvegicus


Alignment Length:141 Identity:92/141 - (65%)
Similarity:108/141 - (76%) Gaps:4/141 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   345 YHCQDCGKSYSTYSGLSKHQQFHCPSAEGNQVKKVFSCKNCDKTYVSLGALKMHIRTHTLPCKCP 409
            :.|..|.:.|.|.:||::|||.||....|    ..|:|:.|||.|.||||||||||||||||.|.
  Rat   188 FECIHCHRPYQTLAGLARHQQLHCHLPTG----CAFTCRYCDKEYASLGALKMHIRTHTLPCVCK 248

  Fly   410 ICGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFADRSNLRAHMQTHSDVKKYSCPTCTKSFSRM 474
            :|||||||||||||||||||||||::|.||:||||||||||||:|||:..|||.|..|.|:||||
  Rat   249 VCGKAFSRPWLLQGHIRTHTGEKPYTCSHCSRAFADRSNLRAHLQTHAGTKKYRCALCPKAFSRM 313

  Fly   475 SLLAKHLQSGC 485
            |||.:|..:||
  Rat   314 SLLVRHEDAGC 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
worNP_476601.1 C2H2 Zn finger 270..290 CDD:275368
C2H2 Zn finger 317..334 CDD:275368
zf-C2H2 345..367 CDD:278523 9/21 (43%)
C2H2 Zn finger 347..367 CDD:275368 9/19 (47%)
PHA00732 379..>417 CDD:177300 28/37 (76%)
C2H2 Zn finger 382..402 CDD:275368 15/19 (79%)
zf-C2H2_8 405..482 CDD:292531 58/76 (76%)
zf-C2H2 406..428 CDD:278523 18/21 (86%)
C2H2 Zn finger 408..428 CDD:275368 17/19 (89%)
zf-H2C2_2 421..444 CDD:290200 18/22 (82%)
zf-C2H2 434..456 CDD:278523 16/21 (76%)
C2H2 Zn finger 436..456 CDD:275368 16/19 (84%)
zf-H2C2_2 448..473 CDD:290200 15/24 (63%)
C2H2 Zn finger 464..481 CDD:275368 10/16 (63%)
Snai3XP_008770833.1 C2H2 Zn finger 190..210 CDD:275370 9/19 (47%)
C2H2 Zn finger 221..241 CDD:275368 15/19 (79%)
zf-C2H2 245..267 CDD:278523 18/21 (86%)
C2H2 Zn finger 247..267 CDD:275368 17/19 (89%)
COG5048 250..>295 CDD:227381 39/44 (89%)
zf-H2C2_2 260..283 CDD:290200 18/22 (82%)
zf-C2H2 273..295 CDD:278523 16/21 (76%)
C2H2 Zn finger 275..295 CDD:275368 16/19 (84%)
zf-H2C2_2 287..312 CDD:290200 15/24 (63%)
C2H2 Zn finger 303..319 CDD:275368 10/15 (67%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353910
Domainoid 1 1.000 50 1.000 Domainoid score I11362
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8936
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X955
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.700

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