DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment esg and Scrt2

DIOPT Version :9

Sequence 1:NP_476600.1 Gene:esg / 34903 FlyBaseID:FBgn0001981 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001178834.1 Gene:Scrt2 / 366229 RGDID:1564796 Length:305 Species:Rattus norvegicus


Alignment Length:344 Identity:120/344 - (34%)
Similarity:156/344 - (45%) Gaps:63/344 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 VPTPTYPKYPWNNFHMSPYTAEFYRTINQQGHQILPLRGDLIAPSSPSDSLGSLSPPPHHYLHGR 184
            ||.|||                         |   ||....:.|       |:..||..   :|.
  Rat    20 VPAPTY-------------------------H---PLETAYVLP-------GTRGPPGD---NGY 46

  Fly   185 ASSVSPPMRSEIIHRPIGVRQHRFLPYPQMPGYPSLGGYTHTHHHHAPISPAYSENSYYSMRSMT 249
            .:...||...:...:| |:..     .|..|.||:..    :..:..|.||    .|..|.|...
  Rat    47 VAHCMPPSGYDGEQKP-GLEL-----APTEPAYPAAA----SEEYSDPESP----QSSLSARYFR 97

  Fly   250 PESSCSSSLPEDLSLKHKNLNLNLNTSQPGEQAAAKTGDMSPETMPNASAKKDKNQPPRYQCPDC 314
            .|::.:.|...|........:........|:.|.|..|....|....:.|......  |:.|.:|
  Rat    98 GEAAVTDSYSMDAFFISDGRSRRRRAGAGGDAAGAGDGGGGGERAGRSGATAGGGH--RHACAEC 160

  Fly   315 QKSYSTFSGLTKHQQFHCPAAEGNQVKKSFSCKDCDKTYVSLGALKMHIRTHTLPCKCNLCGKAF 379
            .|:|:|.|.|::|:|.| .:.:....:|   |..|.|.|||:.||.||:.||.|..||.:|||||
  Rat   161 GKTYATSSNLSRHKQTH-RSLDSQLARK---CPTCGKAYVSMPALAMHVLTHNLRHKCGVCGKAF 221

  Fly   380 SRPWLLQGHIRTHTGEKPFSCQHCHRAFADRSNLRAHLQTHSDIKKYSCTSCSKTFSRMSLLTKH 444
            |||||||||:|:|||||||.|.||.:|||||||||||:||||..|.|.|..|.|:|:..|.|.||
  Rat   222 SRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKH 286

  Fly   445 SEGGC-----PGGSAGSSS 458
            .|..|     |..|||.:|
  Rat   287 CEAACVKAAEPPPSAGPAS 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
esgNP_476600.1 zf-C2H2 309..331 CDD:278523 9/21 (43%)
C2H2 Zn finger 311..331 CDD:275370 9/19 (47%)
zf-C2H2 344..366 CDD:278523 10/21 (48%)
C2H2 Zn finger 346..366 CDD:275368 10/19 (53%)
zf-C2H2 370..392 CDD:278523 17/21 (81%)
C2H2 Zn finger 372..392 CDD:275368 16/19 (84%)
zf-H2C2_2 385..408 CDD:290200 16/22 (73%)
zf-C2H2 398..420 CDD:278523 16/21 (76%)
C2H2 Zn finger 400..420 CDD:275368 15/19 (79%)
C2H2 Zn finger 428..444 CDD:275368 6/15 (40%)
Scrt2NP_001178834.1 C2H2 Zn finger 157..177 CDD:275368 9/19 (47%)
COG5048 <210..>277 CDD:227381 48/66 (73%)
zf-C2H2 212..234 CDD:278523 17/21 (81%)
C2H2 Zn finger 214..234 CDD:275368 16/19 (84%)
zf-H2C2_2 227..250 CDD:290200 16/22 (73%)
C2H2 Zn finger 242..262 CDD:275368 15/19 (79%)
zf-C2H2 242..262 CDD:278523 15/19 (79%)
zf-H2C2_2 254..278 CDD:290200 14/23 (61%)
C2H2 Zn finger 270..286 CDD:275368 6/15 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 179 1.000 Inparanoid score I3910
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.860

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