DRSC/TRiP Functional Genomics Resources

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Protein Alignment nht and taf4b

DIOPT Version :10

Sequence 1:NP_523574.4 Gene:nht / 34902 FlyBaseID:FBgn0041103 Length:245 Species:Drosophila melanogaster
Sequence 2:XP_002940973.3 Gene:taf4b / 100487219 XenbaseID:XB-GENE-995003 Length:892 Species:Xenopus tropicalis


Alignment Length:224 Identity:51/224 - (22%)
Similarity:97/224 - (43%) Gaps:43/224 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 FFDRSSIYKKIM----KHLSQGNQADDINISEQEWLLDSFLAALETYMKHVVKKTIELCEHRTSY 108
            |...|::..:|:    :|..:...:|.:|:...         |.:..::.:::|.....:||::.
 Frog   683 FLFTSALQNRILDIGKRHDIKELNSDVMNLVSH---------ATQERLRGLIEKLTLAAQHRSTN 738

  Fly   109 HLHNDERCVMKNDMRVTMMFLNDLE------------------IADYGSSDDETGFYRKRRAENI 155
            :..:| |.:..:|:|..:.||..||                  .....:.:|......|::|:.:
 Frog   739 YKQSD-RYLKYSDVRAQLKFLEQLEHLEKQRRNEEEREMLLRAAKSRSNREDPEQLRLKQKAKEL 802

  Fly   156 DE-ERKVARLESVNDTALLAISGR-KRPGEQLA-----PESAPSGSKVAKLTGAPIQRACAPRFK 213
            .: |.:..:....|.|||.||..| |||.:.|.     .|:.||||.:..|:    :....||..
 Frog   803 QQMELEQIQYREANLTALAAIGPRKKRPLDSLCLHNGWDETIPSGSTIFGLS----KSLLVPRIT 863

  Fly   214 HMNIRDVLQFMEEDRRYARSNMLFEAYLK 242
            .:::||::..||::|....|..|:.|.||
 Frog   864 RVSLRDLIFCMEQERESKHSLSLYRALLK 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nhtNP_523574.4 TAF4 <85..237 CDD:461598 41/176 (23%)
taf4bXP_002940973.3 PHA03247 <8..520 CDD:223021
TAFH 416..507 CDD:462195
TAF4 645..889 CDD:461598 48/219 (22%)
Blue background indicates that the domain is not in the aligned region.

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