DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cul3 and CUL3B

DIOPT Version :9

Sequence 1:NP_723909.2 Gene:Cul3 / 34896 FlyBaseID:FBgn0261268 Length:934 Species:Drosophila melanogaster
Sequence 2:NP_001319357.1 Gene:CUL3B / 843303 AraportID:AT1G69670 Length:732 Species:Arabidopsis thaliana


Alignment Length:769 Identity:374/769 - (48%)
Similarity:507/769 - (65%) Gaps:41/769 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 RKYPLWLPEYKRRAFNASMDEKYVETIWASLKNAIQEIQKKNNSGLSFEQLYRNAYNMVLHKHGN 230
            :|....:..:|:|..   :|.||.:..|..|::||.||...|.||||||:||||||||||||:|:
plant     5 KKRNFQIEAFKQRVV---VDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKYGD 66

  Fly   231 RLYYGLREVVSEHLEHKVRADVLEALHSNFLPKLNQAWTDHQTSMVMIRDILMYMDRVYVQQREV 295
            :||.||...::.||: ::...:.||....||..||:.|.||..::.|||||||||||.||...:.
plant    67 KLYTGLVTTMTFHLK-EICKSIEEAQGGAFLELLNRKWNDHNKALQMIRDILMYMDRTYVSTTKK 130

  Fly   296 DNVYNLGLILFRDQVVRYSEIQKALREKLLGMVMEERHGEAINHLAIKNACSMLITLGINSRTVY 360
            .:|:.|||.|:||.||..|:||..|...||.:|.:||.||.|:.:.::|...|.:.||   .:||
plant   131 THVHELGLHLWRDNVVYSSKIQTRLLNTLLDLVHKERTGEVIDRVLMRNVIKMFMDLG---ESVY 192

  Fly   361 EEDFEKPFLAQSAAFYKFESQNFLAENNAGVYIKKVEARITEESSRAALYLDKDTEPRIVRVVEE 425
            ::|||||||..||.|||.||..|:...:.|.|:||.|..:.||..|...|||..:|.:|..|||.
plant   193 QDDFEKPFLEASAEFYKVESMEFIESCDCGEYLKKAEKPLVEEVERVVNYLDAKSEAKITSVVER 257

  Fly   426 ELIKKHMRPIVEMENSGVVYMIKNSKTEDLACTYKLFSRLKEEGLKVIADTMSAYLREQGRMLVK 490
            |:|..|::.:|.|||||:|.|:.|.|.||:...|.||.|: ..||..:.|.|:.:|||.|:.||.
plant   258 EMIANHVQRLVHMENSGLVNMLLNDKYEDMGRMYSLFRRV-ANGLVTVRDVMTLHLREMGKQLVT 321

  Fly   491 EEENGNTNPITFVQNLLDLKDRFDQFLVHSFANDRIFKNVISSDFEHFLNLNNKSPEYLSLFIDD 555
            :.|. :.:|:.|||.|||.:|::|:.:..:|.||:.|:|.::|.||:|:|||.:|||::|||:||
plant   322 DPEK-SKDPVEFVQRLLDERDKYDRIINMAFNNDKTFQNALNSSFEYFVNLNTRSPEFISLFVDD 385

  Fly   556 KLKKGGKGMSEQEIESILDKTMVLFRFLLEKDVFERYYKTHLAKRLLLNKSVSDDFEKNMISKLK 620
            ||:||.||:.|::::.||||.|:|||:|.||||||:|||.|||||||..|:||||.|:|:|.|||
plant   386 KLRKGLKGVGEEDVDLILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERNLIVKLK 450

  Fly   621 TECGCQFTSKLEGMFKDMSVSNTIMDEFKNFVNNNNLSLGGVELTVRILTTGFWPTQTATPNCNI 685
            ||||.||||||||||.||..|:   |....|.|::.....|..|.|::||||.|||| .|..||:
plant   451 TECGYQFTSKLEGMFTDMKTSH---DTLLGFYNSHPELSEGPTLVVQVLTTGSWPTQ-PTIQCNL 511

  Fly   686 PAAPREAFDIFKNFYLNKHSGRQLTLQPQMGTAYINAVFYGRKAVESEKDKDAPSSSSSGCGVPT 750
            ||......:.|:::||..|:||:|:.|..||||.|.|||                    |.|   
plant   512 PAEVSVLCEKFRSYYLGTHTGRRLSWQTNMGTADIKAVF--------------------GKG--- 553

  Fly   751 TTRKHILQVSTYQMCVLLLFNNRDVLTYDDIHQETDIPERELVRALQSLSMGKPAQRLLVRNSKT 815
              :||.|.|||:|||||:||||.|.|:|.:|.|.|:||..:|.|.|||::..|...   |...:.
plant   554 --QKHELNVSTFQMCVLMLFNNSDRLSYKEIEQATEIPTPDLKRCLQSMACVKGKN---VLRKEP 613

  Fly   816 KTKDIEPTDEFYVNDAFNSKFHRVKIQTVAAKGESEPERKETRGKVDEDRKHEIEAAIVRIMKAR 880
            .:|:|...|.|.|||.|.|||::|||.||.|:.|:|||::|||.:|:||||.:||||||||||:|
plant   614 MSKEIAEEDWFVVNDRFASKFYKVKIGTVVAQKETEPEKQETRQRVEEDRKPQIEAAIVRIMKSR 678

  Fly   881 KRLAHNLLVSDVTSQLKSRFLPSPVFIKKRIEGLIEREYLQRSPEDRKVYNYLA 934
            :.|.||.::::||.||::|||.:|..||||||.||||::|:|...|||:|.|||
plant   679 RVLDHNNIIAEVTKQLQTRFLANPTEIKKRIESLIERDFLERDNTDRKLYRYLA 732

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul3NP_723909.2 Cullin 196..831 CDD:279260 303/634 (48%)
CULLIN 582..724 CDD:214545 78/141 (55%)
Cullin_Nedd8 866..926 CDD:287520 35/59 (59%)
CUL3BNP_001319357.1 Cullin 29..630 CDD:366357 305/638 (48%)
Cullin_Nedd8 659..726 CDD:214883 40/66 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 553 1.000 Domainoid score I50
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 683 1.000 Inparanoid score I143
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 1 1.000 - - FOG0000491
OrthoInspector 1 1.000 - - otm3226
orthoMCL 1 0.900 - - OOG6_102066
Panther 1 1.100 - - O PTHR11932
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2234
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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