DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul3 and cul4a

DIOPT Version :9

Sequence 1:NP_723909.2 Gene:Cul3 / 34896 FlyBaseID:FBgn0261268 Length:934 Species:Drosophila melanogaster
Sequence 2:NP_001015893.1 Gene:cul4a / 548647 XenbaseID:XB-GENE-1014775 Length:753 Species:Xenopus tropicalis


Alignment Length:803 Identity:300/803 - (37%)
Similarity:442/803 - (55%) Gaps:76/803 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 TETSATTSGPSTSASASAESTEKRFKEIARKYPLWLPEYKRRAFNASMDEKYVETIWASLKNAIQ 201
            |::||.||.|    |||.:...|.||:                 ...:.:.|.:..|..|:.|:.
 Frog    22 TKSSALTSKP----SASKKLIIKNFKD-----------------KPKLPDSYTQDTWQKLQEAVN 65

  Fly   202 EIQKKNNSGLSFEQLYRNAYNMVLHKHGNRLYYGLREVVSEHLE---HKVRADVLEALHSNFLPK 263
            .|:...:...:.|:||:...|:..:|..:.||..||:|..||::   |:.|.|.|::.  .||.|
 Frog    66 AIESSTSIKYNLEELYQAVENLCSYKVSHTLYKQLRQVCEEHMKAQIHQFREDSLDSF--LFLKK 128

  Fly   264 LNQAWTDHQTSMVMIRDILMYMDRVYVQQRE-VDNVYNLGLILFRDQVVRYSEIQKALREKLLGM 327
            :|:.|.||...|:|||.|.:::||.||.|.. :.:::::||.|||..||....:|....:.:|.:
 Frog   129 VNRCWKDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRCHVVSDRMVQIKTIDGILKL 193

  Fly   328 VMEERHGEAINHLAIKNACSMLITLGINSRTVYEEDFEKPFLAQSAAFYKFESQNFLAENNAGVY 392
            :.:||.|||::...:::...||..|     .||:|.||..||.::...|..|.|..:.|.....|
 Frog   194 IEQERSGEAVDRSLLRSLLGMLSDL-----QVYKESFETKFLEETNCLYAAEGQRLMQEREVPEY 253

  Fly   393 IKKVEARITEESSRAALYLDKDTEPRIVRVVEEELIKKHMRPIVEMENSGVVYMIKNSKTEDLAC 457
            :..|..|:.||..|...|||..|...::..||::|:.:|:..|::   .|:..|:..::..:|..
 Frog   254 LHHVNRRLEEEVDRVITYLDHGTHKPLIACVEKQLLGEHLTAILQ---KGLKNMLDENRDPELTL 315

  Fly   458 TYKLFSRLKEEGLKVIADTMSAYLREQGRMLVKEEENGNTNPITFVQNLLDLKDRFDQFLVHSFA 522
            .|:||||:| .|..::......|::..|..||...|...    ..||.|||.||..|..:...|.
 Frog   316 MYQLFSRVK-GGQIILLQHWGEYIKNFGSGLVINPEKDK----DMVQELLDFKDNVDHIIDVCFQ 375

  Fly   523 NDRIFKNVISSDFEHFLNLN-NKSPEYLSLFIDDKLKKGGKGMSEQEIESILDKTMVLFRFLLEK 586
            .:..|.|.:...||.|:|.. ||..|.::.::|.||:.|.|..:::|:|.:|||.|::|||:..|
 Frog   376 KNEKFVNTMKESFETFINRRANKPAELIAKYVDSKLRSGNKEATDEELERLLDKIMIIFRFIHGK 440

  Fly   587 DVFERYYKTHLAKRLLLNKSVSDDFEKNMISKLKTECGCQFTSKLEGMFKDMSVSNTIMDEFKNF 651
            ||||.:||..||||||:.||.|.|.||:|:||||.|||..||||||||||||.:|..:|.:||..
 Frog   441 DVFEAFYKKDLAKRLLVGKSASVDSEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDVMVQFKQH 505

  Fly   652 VNNNNLSLGGVELTVRILTTGFWPTQTATPNCNIPAAPREAFDIFKNFYLNKHSGRQLTLQPQMG 716
            :.|:: ..|.::|||.|||.|:|||.|.. :.::||...:..:|||.|||.|||||:|..|..:|
 Frog   506 MQNHS-DPGNIDLTVNILTMGYWPTYTPV-DVHLPAEMVKLQEIFKAFYLGKHSGRRLQWQSTLG 568

  Fly   717 TAYINAVFYGRKAVESEKDKDAPSSSSSGCGVPTTTRKHILQVSTYQMCVLLLFNNRDVLTYDDI 781
            .|.:.|.|       .|:.|:                   ||||.:|..||||||..|...:::|
 Frog   569 HAVLKADF-------KEEKKE-------------------LQVSLFQTLVLLLFNKGDEFGFEEI 607

  Fly   782 HQETDIPERELVRALQSLSMGKPAQRLLVRNSKTKTKDIEPTDEFYVNDAFNSKFHRVKIQTVAA 846
            ...|.|.:.||.|.||||:.||..    |.|...|:||:|..|.|..|..|..|.:|:||..:..
 Frog   608 KITTGIEDNELRRTLQSLACGKAR----VLNKSPKSKDVEDGDRFCFNADFKHKLYRIKINQIQM 668

  Fly   847 KGESEPERKETRGKVDEDRKHEIEAAIVRIMKARKRLAHNLLVSDVTSQLKSRFLPSPVFIKKRI 911
            | |:..|:..|..:|.:||:::|:||||||||.||.|.||||||::.:|||  |...|..:||||
 Frog   669 K-ETVEEQVNTTERVFQDRQYQIDAAIVRIMKMRKTLTHNLLVSELYNQLK--FPVKPGDLKKRI 730

  Fly   912 EGLIEREYLQRSPEDRKVYNYLA 934
            |.||:|:|::|..::.|.|:|||
 Frog   731 ESLIDRDYMERDKDNAKQYHYLA 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul3NP_723909.2 Cullin 196..831 CDD:279260 236/639 (37%)
CULLIN 582..724 CDD:214545 75/141 (53%)
Cullin_Nedd8 866..926 CDD:287520 33/59 (56%)
cul4aNP_001015893.1 Cullin 58..653 CDD:279260 236/641 (37%)
CULLIN 436..576 CDD:214545 75/141 (53%)
Cullin_Nedd8 682..747 CDD:214883 36/66 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 1 1.000 - - FOG0000491
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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