DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul3 and Cul6

DIOPT Version :9

Sequence 1:NP_723909.2 Gene:Cul3 / 34896 FlyBaseID:FBgn0261268 Length:934 Species:Drosophila melanogaster
Sequence 2:NP_648620.1 Gene:Cul6 / 39474 FlyBaseID:FBgn0036332 Length:670 Species:Drosophila melanogaster


Alignment Length:827 Identity:182/827 - (22%)
Similarity:307/827 - (37%) Gaps:247/827 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 YVETIWASLKNAIQEIQKKNNSGLSFE-----QLYRNAY---------NMVLHKHGNRLYYGLRE 238
            |.:::...:.|.:|.:.:..:...||:     .||...|         |....|:|..||..|.:
  Fly    10 YFDSMLPLIDNILQVVNQIFDDYTSFDGQKLMHLYHLIYKQCAAERNWNNPAQKNGRSLYIVLSD 74

  Fly   239 VVSEHLEHKVRADVLE-ALHSN----FLPKLNQAWTDHQTSMVMIRDILMYMDRVYVQQ------ 292
            .:.:.|  |..|.|:| .|..|    .:.|..:.|..:|.|...:.....:.:|.:|::      
  Fly    75 CLMKRL--KNIAWVMENQLDDNKPIRLIAKYLEHWVPYQRSCEKLNLACYHFNRNWVERERLKGD 137

  Fly   293 REVDNVYNLGLILFRDQVVRYS-EIQKALREKLLGMVMEERHGEAINHLAIKNACSMLITLGINS 356
            :|...:|.|.:|.:::.|...| .|..|:|  |:...|...:.:::.: .:......::.|..|.
  Fly   138 KETYPIYRLAMISWKELVFEPSVTILAAIR--LILSQMPREYNKSLEY-QVYQVLQSIVELYAND 199

  Fly   357 RTVYEE-----DFEKPFLAQSAAFYK----FESQNFLAENNAGVYIKKVEARITEESSRAALYLD 412
            :  |::     ..:|.|..:...|||    .|.|..:..|:                     |.|
  Fly   200 K--YQDVSLPSRIDKIFTEKVMDFYKSTTLHEFQKIVVSND---------------------YKD 241

  Fly   413 KDTEPRIVRVVEEELIKKHMR----PIVEMENSGVVYMIKNSKTEDLACTYKLFSRLKEEGLKVI 473
                           .|..:|    .:.|:||        .::.:.:...| |.:||:|..|.. 
  Fly   242 ---------------FKHFLRYACLAMPEIEN--------GTQFKAILKRY-LAARLQETRLSG- 281

  Fly   474 ADTMSAY-----------LREQGRM------LVKEEENGNTNPITFVQNLLDLKDRFDQFLVHSF 521
            .|.:.|:           ||:..::      :.|||.|.....|...:            |:.::
  Fly   282 KDYIQAFLGLCRGPLQRALRDHTKLAEVVDAVCKEEINRKGQIIDPTR------------LLVTY 334

  Fly   522 ANDRIFKNVISSDFEHFLNLNNKSPEYLSLFIDDKLKKGGKGMSEQEIESILDKTMVLFRFLLEK 586
            ||:                |..|..|                 ||:.|...|.:.:....||.::
  Fly   335 ANE----------------LMTKRQE-----------------SEEAIIDELKRIVKCVEFLSDE 366

  Fly   587 DVFERYYKTHLAKRLLLNKSVSDDFEKNMISKLKTECGCQFTSKLEGMFKDMSVSNTIMDEFKNF 651
            ..|...|...|..|.:...|.||..|..|.|.|..:.....|..:....:|:....|:..||::.
  Fly   367 YKFIDMYLKALRIRQINETSTSDGVESIMYSLLNKKMANFVTRCIYVQLRDVDKLRTLKKEFQDH 431

  Fly   652 VNNNNLSLGGVELTVRILTTGFWPTQTATPNCNIPAAPREAFDI----------FKNFYLNKHSG 706
            :|:..:.||                                ||.          |:||       
  Fly   432 LNSKGIKLG--------------------------------FDFRPKCFKNDGSFENF------- 457

  Fly   707 RQLTLQPQMGTAYIN-AVFYGRKAVESEKDKDAPSSSSSG---CGVPTTTRKHILQVSTYQMCVL 767
             .|||..::..|:.. .:||..:.::|:......:..|||   |.:..:.  :||:|||.||.||
  Fly   458 -NLTLPDELQQAWKEFRIFYEARKLQSKAIIQLNNELSSGEITCHLNQSV--YILEVSTLQMAVL 519

  Fly   768 LLFNNRDVLTYDDIHQETDIPERELVRA----LQSLSMGKPAQRLLVRNSKTKTKDIEPTDEF-- 826
            :|||..:..|           |:|||.|    |::|.......:.||.....|...||...:|  
  Fly   520 MLFNRHERFT-----------EQELVTALGVELETLQEALKQIKFLVYIEVNKVNYIEINMDFTN 573

  Fly   827 -----YVNDAFNSKFHRVKIQTVAAKGESEPERKETRGKVDEDRKHEIEAAIVRIMKARKRLAHN 886
                 :.|:....|..:::            |:.|...|:..|:  :::||||||||.:|:|.::
  Fly   574 RKRRLFCNEPLPRKMRKIE------------EKSEIELKIRRDK--QVDAAIVRIMKGQKQLEYS 624

  Fly   887 LLVSDVTSQLKSRFLPSPVFIKKRIEGLIEREYLQRSPEDRKVYNYL 933
            .|:|.|..:||.|..|...|||||::.|:|||||:|. ....:|.||
  Fly   625 ELISLVYEELKDRVKPQVSFIKKRLDYLVEREYLERD-NYYNIYRYL 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul3NP_723909.2 Cullin 196..831 CDD:279260 144/715 (20%)
CULLIN 582..724 CDD:214545 30/152 (20%)
Cullin_Nedd8 866..926 CDD:287520 29/59 (49%)
Cul6NP_648620.1 COG5647 25..670 CDD:227934 177/810 (22%)
CULLIN 362..500 CDD:214545 36/177 (20%)
Cullin_Nedd8 606..661 CDD:287520 28/54 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467943
Domainoid 1 1.000 52 1.000 Domainoid score I2831
eggNOG 1 0.900 - - E1_COG5647
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11932
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.850

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