DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cul3 and cul4a

DIOPT Version :9

Sequence 1:NP_723909.2 Gene:Cul3 / 34896 FlyBaseID:FBgn0261268 Length:934 Species:Drosophila melanogaster
Sequence 2:NP_957321.1 Gene:cul4a / 394002 ZFINID:ZDB-GENE-040426-1357 Length:635 Species:Danio rerio


Alignment Length:694 Identity:241/694 - (34%)
Similarity:369/694 - (53%) Gaps:71/694 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 VKTETSATTSGPSTSASASAES--TEKRFKEIARKYPLWLPEYKRRAFNASMDEKYVETIWASLK 197
            |:.:..::.:|.|.||.|.|..  ..|.||:                 ...:.:.|.|..|..|:
Zfish     5 VQHQQKSSFNGLSKSAKAGASKKLVIKNFKD-----------------RPKLTDSYTEDTWLKLR 52

  Fly   198 NAIQEIQKKNNSGLSFEQLYRNAYNMVLHKHGNRLYYGLREVVSEHLE---HKVRADVLEALHSN 259
            :|:..||...:...:.|:||:...|:..:|....||..||:|..||::   |:.|.:.|::|  :
Zfish    53 DAVSAIQNSTSIQYNLEELYQAVENLCSYKVSPMLYKQLRQVCEEHVQAQIHQFREESLDSL--S 115

  Fly   260 FLPKLNQAWTDHQTSMVMIRDILMYMDRVYVQQRE-VDNVYNLGLILFRDQVVRYSEIQKALREK 323
            ||.::|:.|.||....:|||.|.:::||.||.|.. :.::::.||.|||..:|..:.:|....:.
Zfish   116 FLKRMNRCWQDHCRQTIMIRSIFLFLDRTYVLQNSLLPSIWDTGLELFRTHIVSDAAVQSRTVQG 180

  Fly   324 LLGMVMEERHGEAINHLAIKNACSMLITLGINSRTVYEEDFEKPFLAQSAAFYKFESQNFLAENN 388
            :|..|..||.||.::...:::...||..|     .||::.||:.||:::...|..|.|..:.|.:
Zfish   181 ILEQVERERSGETVDRSLLRSLLGMLSDL-----QVYKDSFEQRFLSETTRLYAAEGQRLMQERD 240

  Fly   389 AGVYIKKVEARITEESSRAALYLDKDTEPRIVRVVEEELIKKHMRPIVEMENSGVVYMIKNSKTE 453
            ...|:..|..|:.||:.|...|||:.|:..::..||::|:.:||..|::   .|:..::..::..
Zfish   241 VPEYLHHVARRLEEENDRVISYLDQSTQKPLIATVEKQLLGEHMTTILQ---KGLRTLLDENRVC 302

  Fly   454 DLACTYKLFSRLKEEGLKVIADTMSAYLREQGRMLVKEEENGNTNPITFVQNLLDLKDRFDQFLV 518
            :|...|:|||::| .||..:..:...|::..|...|...|...    ..||.|||.||:.|....
Zfish   303 ELTLLYELFSKVK-GGLTALLQSWREYIKSVGAETVCSPERDR----EMVQELLDFKDQMDSVTQ 362

  Fly   519 HSFANDRIFKNVISSDFEHFLNLN-NKSPEYLSLFIDDKLKKGGKGMSEQEIESILDKTMVLFRF 582
            ..|..:..|.|.:...||:|:|.. ||..|.::.::|.||:.|.|..:|:|:|.||||.|::|||
Zfish   363 SCFQRNESFINAMKEAFENFINQRPNKPAELIAKYVDSKLRAGNKEATEEELERILDKIMIIFRF 427

  Fly   583 LLEKDVFERYYKTHLAKRLLLNKSVSDDFEKNMISKLKTECGCQFTSKLEGMFKDMSVSNTIMDE 647
            :..|||||.:||..||||||:.||.|.|.||:|:||||.|||..||||||||||||.:|..||.:
Zfish   428 IHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQ 492

  Fly   648 FKNFVNNNNLSLGGVELTVRILTTGFWPTQTATPNCNIPAAPREAFDIFKNFYLNKHSGRQLTLQ 712
            ||.::.|.. ....:||||.|||.|:||:.|.. :.::||...:..::||.|||.|||||:|..|
Zfish   493 FKQYMQNQT-EPSNIELTVNILTMGYWPSYTPM-DVHLPAEMVKLQEVFKLFYLGKHSGRKLQWQ 555

  Fly   713 PQMGTAYINAVFYGRKAVESEKDKDAPSSSSSGCGVPTTTRKHILQVSTYQMCVLLLFNNRDVLT 777
            |.:|.|.:...|     .|.:|:                     ||||.:|..|||:||..|..:
Zfish   556 PTLGHAVLKTEF-----KEGKKE---------------------LQVSLFQTLVLLMFNESDECS 594

  Fly   778 YDDIHQETDIPERELVRALQSLSMGKPAQRLLVRNSKTKTKDIE 821
            .::|...|.|.|.||.|.||||:.||..    |.|...:.|::|
Zfish   595 VEEIRVATGIEEGELKRTLQSLACGKAR----VLNKTPRGKEVE 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul3NP_723909.2 Cullin 196..831 CDD:279260 228/631 (36%)
CULLIN 582..724 CDD:214545 74/141 (52%)
Cullin_Nedd8 866..926 CDD:287520
cul4aNP_957321.1 Cullin 50..635 CDD:279260 228/632 (36%)
CULLIN 427..567 CDD:214545 74/141 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 1 1.000 - - FOG0000491
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.930

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