DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul3 and pcu4

DIOPT Version :9

Sequence 1:NP_723909.2 Gene:Cul3 / 34896 FlyBaseID:FBgn0261268 Length:934 Species:Drosophila melanogaster
Sequence 2:NP_594195.1 Gene:pcu4 / 2543116 PomBaseID:SPAC3A11.08 Length:734 Species:Schizosaccharomyces pombe


Alignment Length:797 Identity:212/797 - (26%)
Similarity:364/797 - (45%) Gaps:102/797 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 PEYKR---RAF----NASMDEKYVETIWASLKNAIQEIQKKNNSGLSFEQLYRNAYNMVLHKHGN 230
            ||.||   :.|    :....|.|..|:...|..|:|.:.........:::||....|:......:
pombe     3 PEAKRIVVKGFDPRKSRQRQETYYVTMIDRLNMALQVVMAGLGLKTGYQELYSGVENLTRADQAS 67

  Fly   231 RLYYGLREVVSEHLEHKVRADVLEALHSNFLPKLNQAWTDHQTSMV-------------MIRDIL 282
            |.:    .::..|:...::  :|:....:|: :|....||.....|             ::::|.
pombe    68 RCF----NILQHHMSSGIQ--LLKDSAESFI-QLEGTETDTNACTVVVGCWNKWLERVEIVQNIF 125

  Fly   283 MYMDRVYVQQR-EVDNVYNLGLILFRDQVVRYSEIQKALREKLLGMVMEERHGEAINHLAIKNAC 346
            .|||:.::... :...:..|.|.|||::::....||......||.........::.:|..:::|.
pombe   126 YYMDKTFLSHHPDYPTIEELSLSLFREKLMAVKNIQIPFLNSLLQSFENLHSSKSTDHAYLQDAM 190

  Fly   347 SMLITLGINSRT-VYEEDFEKPFLAQSAAFYKFESQNFLAENNAGVYIKKVEARITEESSRAALY 410
            .||      .|| :|...|...:|...:.||..||...:.|.....|::...:.:..|.:    |
pombe   191 LML------HRTEMYSSVFVPMYLVMLSRFYDTESSQKIQELPLEEYLEYAMSSLEREDA----Y 245

  Fly   411 LDK----DTEPRIVRVVEEELIKKHMRPIVEMENSGVVYMIKNSKTEDLACTYKLFSRLKEEGLK 471
            ::|    ..:..|...|:..||..|:..:.:    |:...|:..........|.|.....|  .:
pombe   246 VEKFDIVRDKKSIRETVQRCLITSHLDTLTK----GISQFIEKRDAHSCKLLYALLQFNHE--TE 304

  Fly   472 VIADTMSAYLREQGRMLVKEEENGNTNPITFVQNLLDLKDRFDQFLV-HSFANDRIFKNVISSDF 535
            .:....|..|.:.|..||.:|...:    |.||.||.. .:|.|.:| .||.:|......:...|
pombe   305 YLIQPWSDCLVDVGFKLVNDESKDD----TLVQELLSF-HKFLQVVVDESFLHDETLSYAMRKAF 364

  Fly   536 EHFLN----LNNKSP-EYLSLFIDDKLKKGGKGMSEQEIESILDKTMVLFRFLLEKDVFERYYKT 595
            |.|:|    ...::| ..::.:||..|:.|.:....:.::.:..:.:.|||::..||:||.|||.
pombe   365 ETFINGAKGSQREAPARLIAKYIDYLLRVGEQASGGKPLKEVFSEILDLFRYIASKDIFEAYYKL 429

  Fly   596 HLAKRLLLNKSVSDDFEKNMISKLKTECGCQFTSKLEGMFKDMSVSNTIMDEFKNFVNNNNLSLG 660
            .:|||||||||.|...|..::..||..||.|||..|||||:|:::|......|::....:||.. 
pombe   430 DIAKRLLLNKSASAQNELMLLDMLKKTCGSQFTHSLEGMFRDVNISKEFTSSFRHSKAAHNLHR- 493

  Fly   661 GVELTVRILTTGFWPTQTATPNCNIPAAPREAFDIFKNFYLNKHSGRQLTLQPQMGTAYINAVF- 724
              :|.|.:|:..:||:...: :..:|...::..|.|:.|||:|..|::::....:|...:.|.| 
pombe   494 --DLYVNVLSQAYWPSYPES-HIRLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFP 555

  Fly   725 YGRKAVESEKDKDAPSSSSSGCGVPTTTRKHILQVSTYQMCVLLLFNN---RDVLTYDDIHQETD 786
            .|.|.                           |.:|.:|.||||.|||   .:.::|.|:.:.|:
pombe   556 LGNKE---------------------------LSISLFQACVLLQFNNCLGGEGISYQDLKKSTE 593

  Fly   787 IPERELVRALQSLSMGKPAQRLLVRNSKTKTKDIEPTDEFYVNDAFNSKFHRVKIQTVAAKGESE 851
            :.:.:|.|.|||||..:....::|    .|:|...|...||||:.|..|.:||||..:..| |..
pombe   594 LSDIDLTRTLQSLSCARIRPLVMV----PKSKKPSPDTMFYVNEKFTDKLYRVKINQIYLK-EER 653

  Fly   852 PERKETRGKVDEDRKHEIEAAIVRIMKARKRLAHNLLVSDVTSQLKSRFLPSPVFIKKRIEGLIE 916
            .|..:.:.:|..||:.|::|:|||:||.::::.|:.||..|.:.:|.|.:|....:|..||.|:|
pombe   654 QENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIPLVSDVKTAIEKLLE 718

  Fly   917 REYLQRSPEDRKVYNYL 933
            :|||:|  ||..:|.|:
pombe   719 KEYLER--EDNDIYTYV 733

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul3NP_723909.2 Cullin 196..831 CDD:279260 165/663 (25%)
CULLIN 582..724 CDD:214545 50/141 (35%)
Cullin_Nedd8 866..926 CDD:287520 23/59 (39%)
pcu4NP_594195.1 COG5647 1..734 CDD:227934 212/797 (27%)
CULLIN 416..554 CDD:214545 50/141 (35%)
Cullin_Nedd8 663..730 CDD:214883 28/68 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoFinder 1 1.000 - - FOG0000491
OrthoInspector 1 1.000 - - otm47383
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

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