DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cul3 and cul-6

DIOPT Version :9

Sequence 1:NP_723909.2 Gene:Cul3 / 34896 FlyBaseID:FBgn0261268 Length:934 Species:Drosophila melanogaster
Sequence 2:NP_502412.1 Gene:cul-6 / 178214 WormBaseID:WBGene00000841 Length:729 Species:Caenorhabditis elegans


Alignment Length:791 Identity:209/791 - (26%)
Similarity:358/791 - (45%) Gaps:109/791 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 VETIWASLKNAIQEIQKKNN-SGLSFEQLYRNAYNM----VLHKHGNRLYYGLREVVSEHLEHKV 248
            :|.:|.:|::.:..:.::.: |...:..||...||:    .|....|.......|.:.:.||:.:
 Worm     3 IEAVWGTLQDGLNLLYRREHMSKKYYMMLYDAVYNICTTTTLANSNNNSPEFASEFLYKQLENYI 67

  Fly   249 RADVLEALH--------SNFLPKLNQAWTDHQTSMVMIRDILMYMDRVYVQQR------EVDNVY 299
            |..|: |:.        ...|.|....|.:.:.|..:...|..|::|.:|.::      |:..:|
 Worm    68 RTYVI-AIRDRISACSGDELLGKCTIEWDNFKFSTRICNCIFQYLNRNFVSKKVEDKNGEIVEIY 131

  Fly   300 NLGLILFRDQVVRYSEIQKALREKLLGMVMEERHGEAINHLAIKNACSMLITLGINSRTVYEEDF 364
            .|.|.:::.:.  :...:....:.:|.:::.||.|..||...|.:....|..|.|     |:..|
 Worm   132 KLALDIWKAEF--FDNFKVKTIDAILELILLERCGSTINSTHISSVVECLTELDI-----YKVSF 189

  Fly   365 EKPFLAQSAAFYKFESQNFLAENNAGVYIKKVEARITEESSRAALYLDKDTEPRIVRVVEEELIK 429
            |..||..:..|||.|..|  ::.....|:..||.|:.:|..|:..||...|...::...|..||.
 Worm   190 EPQFLDATKLFYKQEVLN--SKETVIEYMITVENRLFQEEYRSRRYLGPSTNDLLIDSCESILIS 252

  Fly   430 KHMRPIVEMENSGVVYMIKNSKTEDLACTYKLFSRLKEEGLKVIADTMSAYLREQGRMLVKE--- 491
            ..::.:    :|....:::..|.|.|...|.|..|: ..||    :.:..||.::   ::||   
 Worm   253 DRLKFL----HSEFERLLEARKDEHLTRMYSLCRRV-THGL----EDLRVYLEKR---ILKEGHE 305

  Fly   492 ------EENG-NTNPITFVQNLLDLKDRFDQFLVHSFANDRIFKNVISSDFEHFLNLN------- 542
                  :::| .|.|..::..||::.:.:...:..:|..:.:|...:....:.|:..|       
 Worm   306 TLQRLAKDSGLKTTPKEYITKLLEVHEIYFNLINKAFDRNALFMQSLDKASKDFIEANAVTMLAP 370

  Fly   543 -----NKSPEYLSLFIDDKLKKGGKGMSEQEIESILDKTMVLFRFLLEKDVFERYYKTHLAKRLL 602
                 .:|.:||:.:.|..|||.    |:.:.|:.|||.:.:.:::.|||||:.||:...::|::
 Worm   371 EKHRSTRSADYLARYCDQLLKKN----SKVQDETALDKALTVLKYISEKDVFQLYYQNWFSERII 431

  Fly   603 LNKSVSDDFEKNMISKLKTECGCQFTSKLEGMFKDMSVSNTIMDEFKNFVNNNNLSLGGVELTVR 667
            .|.|.|||.|:..|:.|....|.::|..|..|.:|..:|..:..|||:.....:     ::..|.
 Worm   432 NNSSASDDAEEKFITNLTATEGLEYTRNLVKMVEDAKISKDLTTEFKDIKTEKS-----IDFNVI 491

  Fly   668 ILTTGFWPTQTATPNCNIPAAPREAFDI---FKNFYLNKHSGRQLTLQPQMGTAYINAVFYGRKA 729
            :.|||.||   :.....| ..|||...|   |..||...|:||:|..........:|:     ||
 Worm   492 LQTTGAWP---SLDQIKI-ILPRELSTILKEFDTFYNASHNGRRLNWAYSQCRGEVNS-----KA 547

  Fly   730 VESEKDKDAPSSSSSGCGVPTTTRKHILQVSTYQMCVLLLFNNRDVLTYDDIHQETDIPERELVR 794
            .|                     :|::..|:..|:|.|.|||.:|..|.:.|.:..::..:....
 Worm   548 FE---------------------KKYVFIVTASQLCTLYLFNEQDSFTIEQISKAIEMTAKSTSA 591

  Fly   795 ALQSLSMGKPAQRLLVRNSKTKTKDIEPTDEFY-VNDAFNSKFHRVKIQTVAAKGESEPERKETR 858
            .:.||:   |....::...|...||..|.|... :|..:.:|..||.:.|...|..::.|....:
 Worm   592 IVGSLN---PVIDPVLVVDKGNEKDGYPPDAVVSLNTKYANKKVRVDLTTAIKKATADRETDAVQ 653

  Fly   859 GKVDEDRKHEIEAAIVRIMKARKRLAHNLLVSDVTSQLKSRFLPSPVFIKKRIEGLIEREYLQRS 923
            ..|:.|||:||:|.||||||.||.|.|.||::::.|||||||.|:...||..||.|||:.|::||
 Worm   654 NTVESDRKYEIKACIVRIMKTRKSLTHTLLINEIISQLKSRFTPNVQMIKICIEILIEQLYIRRS 718

  Fly   924 PEDRKVYNYLA 934
            ..:..||.|||
 Worm   719 ENEHNVYEYLA 729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul3NP_723909.2 Cullin 196..831 CDD:279260 159/679 (23%)
CULLIN 582..724 CDD:214545 44/144 (31%)
Cullin_Nedd8 866..926 CDD:287520 34/59 (58%)
cul-6NP_502412.1 Cullin 10..596 CDD:279260 150/646 (23%)
CULLIN 411..547 CDD:214545 44/149 (30%)
Cullin_Nedd8 656..723 CDD:214883 37/66 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.830

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