DRSC/TRiP Functional Genomics Resources

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Protein Alignment yuri and ccdc18

DIOPT Version :9

Sequence 1:NP_723903.3 Gene:yuri / 34894 FlyBaseID:FBgn0045842 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_001352065.1 Gene:ccdc18 / 564276 ZFINID:ZDB-GENE-030131-5414 Length:1321 Species:Danio rerio


Alignment Length:944 Identity:203/944 - (21%)
Similarity:369/944 - (39%) Gaps:247/944 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASRQAGFVLDAKSMGLNPSRP-----ASSPPPPPSSASQMCRQVQPTGTSASHPHQESTLKA-- 58
            :.:||....::|..|.|..||.     .|:.....||.|.|..|:  .|..|   ..::..||  
Zfish   110 LQNRQLMGDIEAAQMELASSRSKIRMLGSTVGARTSSVSHMKEQI--LGLEA---ELDTLTKALE 169

  Fly    59 SSPDRCTASTEAMSTEHYRCLIQKLRDTNGDAGDMSFELNSIFLKRLDEIDC---LDEHEGDDMH 120
            |:..|.....:.:...|.  |::||||          ||..|..:..|....   .::.....:.
Zfish   170 SAEQRLEVREQTLMQSHR--LVEKLRD----------ELRIIKAELADRTRLGKRAEQQRNQALQ 222

  Fly   121 TCQLRLVTFQEWVDFLLHVNSVILGNVSD-----LEKEAYSKIVACCQSVQVRQQHTLEENRRLR 180
            ..:...|||:|:.:           :|::     ||.|...||             :|.|..|.|
Zfish   223 NAEKLTVTFKEYKE-----------DVAEKLRKVLESEDQLKI-------------SLMECDRER 263

  Fly   181 EDICAIIERVQHSPHCTDFDFNGISLETLTVNQLRGVGKDPAHAECESEKMSESMKSLVGEIAAK 245
            |:    :||     .||       :||:...|.|        |..||.::.....:||..|....
Zfish   264 EE----LER-----KCT-------ALESEKENLL--------HNLCELKEAVSRSESLSTERVQM 304

  Fly   246 HDEIGELKSQINALDEVVHTARQKLLLKDQC-IAQLNQQLHEITRCIESRDQAKMEESPNDTLTA 309
            ..::.:...||..|.:  ..|.::..|:|.. :.:.|:.|..:|.|.|.|......|...|....
Zfish   305 QSQLQQFSDQIKQLQK--ELAEKEAQLQDMAGLRRENEDLRLLTACQEQRVAQAHREREQDRAEL 367

  Fly   310 DAITSDMLENLSIHDTQESEMLRLLNAELNDLLDLHNKQEFQTIEIRRKRVSCFIEKLVS----- 369
            .::.| :|:.|.:.:.:|..:  .:|..|...|...|..|    .:|.|.|....:||::     
Zfish   368 TSLES-VLDLLHLRENREGVL--CVNPCLLPALSYTNTTE----SLRHKPVGERYQKLLAVLQMV 425

  Fly   370 --EREDTLKKLESIRSHLTILQSDLDQSCLISVDPESGPCDLDADAQMLE----------ALRRR 422
              |:...:...:|::..|:..|.::  |.|.:...|..........|:||          .|:::
Zfish   426 EKEKSRQVSAAQSLQERLSRAQEEI--SSLQNSITERASHYHQLHNQLLEKATQATALEKELKKK 488

  Fly   423 LLNLSQLNRELHGKYQRLDTESKIKISELEARIESESSVLQRNSDVLREIAELICSLGSKEFSYN 487
            .|.::.|.::|..|.... :::.:|..:||..:..::|.:|....||.:          |:..|.
Zfish   489 NLRVAVLEKQLQEKSSAY-SQAVMKTGQLEQDLLEKTSSIQHYQSVLNK----------KQREYQ 542

  Fly   488 EIYD-----ESSKENPFCTTIADMFARKFEQEQNQVEINGQLSCQIKGLQENLKD--RDNQISQ- 544
            :..|     :|.|    |..:.|      |:|..|:.: .|...:|:.|::||.|  |:.|.:| 
Zfish   543 QTVDKVKLAQSHK----CKEMED------EREVLQLSL-AQKQTEIEELEQNLTDVHREKQEAQQ 596

  Fly   545 ----LQSMINSYS-DFSENNRLKEE-MHVLKQKNCDLSRQLRDLPSLLKN-QENQSVELCTKYES 602
                |||.|:..: ||...::..|| :..::::..|.:.:||.|.|.|.: :|..||.|      
Zfish   597 RATLLQSFIDRLTEDFEAKSKCSEETLRNVEEQAADSASKLRSLQSELSSCKEELSVYL------ 655

  Fly   603 LMASFEDQCQELKDAKRKAQSLQTRLDQVEQLQDELRTERKILREEVVALKEKEAVSSGRERALQ 667
                  .|.:|:|  |...:.|:.:..::.|||:|||             ::.||..|..|..||
Zfish   656 ------QQMEEIK--KHHEKQLEVKSSELSQLQEELR-------------RKCEAYQSSSEENLQ 699

  Fly   668 ------------DQQKSAQLEMEKMRTLVRKMQSHLQLDDIRHRESIQRMNETTESLREELRTIS 720
                        ::..|...::|:.::|::...|.|:.|..:.|.::      :::||:..|.:.
Zfish   700 LQHSIQNQHCMLEESTSRITQLEESQSLLQSQVSQLEQDLEKERSAL------SQALRKREREVE 758

  Fly   721 ENCQQMQIRLNQQTEVNQQQEQI---------------IDSFRKWKDAQVRADEAMR-------- 762
            |..|::|.:..|..|::....|:               ::..|..:|:..:|.:.::        
Zfish   759 EVNQEVQKKERQAAELSGSITQLSSEMSKCRVELSDMELELLRLRRDSNTKASQLVQMEETLKET 823

  Fly   763 --LCAKRAEEHIHMLLDENRTLAE-DYRNLFRDYKLLETEIKRVKQAVNCASSSAISCPPPKSGG 824
              |..|::|  |.:.|:|....:| |.||..:..:|||.::|.|:                    
Zfish   824 KGLLDKKSE--IVIDLEEKLHRSEMDRRNSLQRAQLLEGQLKEVR-------------------- 866

  Fly   825 LTNPEAGNDMARRLQNLTSTSQRIFNQNQTMNDQ 858
                   .::|..|.:|...|. :....|..:||
Zfish   867 -------GELADTLDHLQELSD-VLQHTQLTSDQ 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yuriNP_723903.3 MIT_CorA-like <247..>346 CDD:294313 21/99 (21%)
Yuri_gagarin 468..698 CDD:292556 62/256 (24%)
BAR <598..736 CDD:299863 31/149 (21%)
ccdc18NP_001352065.1 SMC_N <83..375 CDD:330553 73/332 (22%)
SMC_N 240..1051 CDD:330553 169/786 (22%)
SMC_N 947..>1190 CDD:330553
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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