DRSC/TRiP Functional Genomics Resources

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Protein Alignment dao and Smyd3

DIOPT Version :9

Sequence 1:NP_001260462.1 Gene:dao / 34891 FlyBaseID:FBgn0028862 Length:882 Species:Drosophila melanogaster
Sequence 2:NP_081464.1 Gene:Smyd3 / 69726 MGIID:1916976 Length:428 Species:Mus musculus


Alignment Length:498 Identity:94/498 - (18%)
Similarity:163/498 - (32%) Gaps:171/498 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 EVLKVERFEMAVQTGDDLDINDSKAFEIAWLDNSSSLHTTRAVAKNALIFESEAVAMVPSGNCR- 353
            |.||||:|..|                    :..:.|.....:....|:|.|:.:|.......| 
Mouse     2 EALKVEKFTTA--------------------NRGNGLRAVAPLRPGELLFRSDPLAYTVCKGSRG 46

  Fly   354 -VCDYCGITQFIPFPCIYCSNRLVVYCSRQCRFKHAAIHAVECFGHQIELFESFGEVFGMPRLLQ 417
             |||.|.:.:.....|..|  |:..|||.:|:.|....|..||                      
Mouse    47 VVCDRCLLGKEKLMRCSQC--RIAKYCSAKCQKKAWPDHRREC---------------------- 87

  Fly   418 LAFRMLITGLPELLGHCRKK--PTLSKLWSAINGGLQERQDIAYSAVLRLERLKEERPTDTVIAL 480
                       ..|..|:.:  |...:|...:                 :.:|.:|:|:::    
Mouse    88 -----------SCLKSCKPRYPPDSVRLLGRV-----------------IVKLMDEKPSES---- 120

  Fly   481 ALAAHILSIYLSKCTTFFDQLEKSLPTASRMSSAEWE-LLCAALLMRHIGQLRHRSLTACRSFVL 544
                       .|..:|:| ||.::   |:::..:.| |...|:..:|.  :|.....|.:   |
Mouse   121 -----------EKLYSFYD-LESNI---SKLTEDKKEGLRQLAMTFQHF--MREEIQDASQ---L 165

  Fly   545 PADPHVFSPL-----NEFQLWAAPMRLQEGHLHLLAGEVAVVSYSVYPDTLNLCRHSCSSTICAK 604
            |....:|...     |.|.:..|.|:           ||.|   .:|| :::|..|||.......
Mouse   166 PPSFDLFEAFAKVICNSFTICNAEMQ-----------EVGV---GLYP-SMSLLNHSCDPNCSIV 215

  Fly   605 FSGRTVTALALLDLPAGSGIYNCFAGGNFQQLPREERTKQLLES-GIRCHCNACQLTHSDDQFHK 668
            |:|..:...|:.::.||..:..|:..   ..:..|||.|||.:. ...|.|..||....|     
Mouse   216 FNGPHLLLRAVREIEAGEELTICYLD---MLMTSEERRKQLRDQYCFECDCIRCQTQDKD----- 272

  Fly   669 FHRYRCDNPNCMEIFTPNALPHAPSLRWWLSEEYTQPEFNGADLIMCPHCGEYQKLEWFWAFTTS 733
                       .::.|.:.       :.|...:.:..:.            |..|..|.|....:
Mouse   273 -----------ADMLTGDE-------QIWKEVQESLKKI------------EELKAHWKWEQVLA 307

  Fly   734 LIDCELIEERCKLYAAIERAENQLMDLHECKVALARLLLEQCL 776
            |  |:         |.|....|:|.|::..::.:....::.|:
Mouse   308 L--CQ---------AIINSNSNRLPDINIYQLKVLDCAMDACI 339

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
daoNP_001260462.1 TPR_11 165..235 CDD:290150
TPR repeat 200..235 CDD:276809
TPR repeat 243..270 CDD:276809
zf-MYND 355..395 CDD:280009 12/39 (31%)
Smyd3NP_081464.1 S-adenosyl-L-methionine binding. /evidence=ECO:0000250|UniProtKB:Q9H7B4 14..16 0/1 (0%)
zf-MYND 49..87 CDD:280009 12/39 (31%)
SET <201..239 CDD:279228 9/37 (24%)