DRSC/TRiP Functional Genomics Resources

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Protein Alignment dao and Smyd3

DIOPT Version :9

Sequence 1:NP_001260462.1 Gene:dao / 34891 FlyBaseID:FBgn0028862 Length:882 Species:Drosophila melanogaster
Sequence 2:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster


Alignment Length:433 Identity:85/433 - (19%)
Similarity:137/433 - (31%) Gaps:136/433 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   332 VAKNALIFESEAVAMVPSGNCRV--CDYC-GITQFIPFPCIYCSN-RLVVYCSRQCRFKHAAIHA 392
            :.:...|...:..|.|.....|:  ||.| ..|:.:.     ||| |.|.||.|.|:.:....|.
  Fly    35 IKRGQRILTEKPFAFVLKSQYRLERCDNCLEATKVLK-----CSNCRYVSYCHRSCQMQAWGQHK 94

  Fly   393 VEC-FGHQIELFESFGEVFGMPRLLQLAFRMLITGLPELLGHCRKKPTLSKLWSAINGGLQERQD 456
            .|| |..::.           ||::..|.|||          ||                     
  Fly    95 HECPFLKKVH-----------PRVVPDAARML----------CR--------------------- 117

  Fly   457 IAYSAVLRLERLKEERPTDTVIALALAAHILSIYLSK--CTTFFDQLEKSLPTASRMSSAEWELL 519
                .:||||.               ...::..|.::  ...|.|                    
  Fly   118 ----LILRLEH---------------GGDLIRGYYTEHGSRKFRD-------------------- 143

  Fly   520 CAALLMRHIGQLRH--------RSLTACRSFVLPADPHVFSPLNEFQLWAAPMRLQEGHLHLLAG 576
                ||.|..::::        .||.|..:.::...|....  |:.:|.:...||.....::|..
  Fly   144 ----LMSHYAEIKNDPMRLEHLDSLHAVLTDMMAESPSTVP--NKTELMSIYGRLITNGFNILDA 202

  Fly   577 EVAVVSYSVYPDTLNLCRHSCSSTICAKFSGRTVTALALLDLPA--GSGIYNCFAGGNFQQLPRE 639
            |:..::.::|.. :::..|||.....|.|.|..:...|:.|:..  .|.|:..:.  :....|.:
  Fly   203 EMNSIATAIYLG-VSITDHSCQPNAVATFEGNELHVHAIEDMECLDWSKIFISYI--DLLNTPEQ 264

  Fly   640 ERTKQLLESGIRCHCNAC-QLTHSDDQFHKFHRYRCDNPNCMEIFT--PNALPH-----APSLRW 696
            .|..........|.|:.| ....|.:.....    |.|.||....:  .|..|.     :|.||.
  Fly   265 RRLDLKEHYYFLCVCSKCTDAKESKEMLAAL----CPNRNCGAGISVDRNNCPRCDAGISPKLRN 325

  Fly   697 WLSEEYTQPEFN------GADLIMCPHC-----GEYQKLE-WF 727
            ..:|..|....|      .|.|.:|..|     |.:..|. |:
  Fly   326 AFNEAMTLTRHNLENMKDVAYLDVCKVCLDKQTGVFHPLNVWY 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daoNP_001260462.1 TPR_11 165..235 CDD:290150
TPR repeat 200..235 CDD:276809
TPR repeat 243..270 CDD:276809
zf-MYND 355..395 CDD:280009 14/41 (34%)
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 14/41 (34%)
TPR_12 377..440 CDD:290160
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45473064
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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