DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dao and Smyd4-4

DIOPT Version :9

Sequence 1:NP_001260462.1 Gene:dao / 34891 FlyBaseID:FBgn0028862 Length:882 Species:Drosophila melanogaster
Sequence 2:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster


Alignment Length:588 Identity:119/588 - (20%)
Similarity:204/588 - (34%) Gaps:149/588 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 EDDDLIGAVGGLGISSPTTTKE----------PVLDFRPHVLKWFQH--LRHQTGHFKSEEESRR 168
            :|..|||.:.|    .....||          .::||: ::.|.|.:  ||..    |..:.|..
  Fly    15 QDWKLIGIISG----KFNELKENHRKVDFVMRALIDFK-YIEKIFLNVTLRED----KCNKRSVE 70

  Fly   169 LREAGNDSYR-KERHPLKASDLFTEAIFLAPARNTLAAALAHANRSLVLFDCGLYAESYDDCLCA 232
            .|..||:.:. |.|:..:|.:|:.::|..|.. |:...::.:||||.|||:...|.:..|:...|
  Fly    71 FRMLGNEQFSLKNRNYFQALELYNKSICYAEP-NSEHLSIGYANRSAVLFEWKRYRQCLDNIKLA 134

  Fly   233 LDLGYPEEYLPLIKLRQAACALKLRNFALCEEHLHELLHIELNQVFEARTH-----ELWHQCEVL 292
            ....||......:..|:..|.      .|.::...:::..|....||....     :.....|..
  Fly   135 RQANYPARLSHKLDKRERDCQ------QLLDQQPPDVVPYEFKLSFEPHAQVPFIADCLELRETA 193

  Fly   293 KVERFEMAVQTGDDLDINDSKAFEIAWLDNSSSLHTTRAVAKNALIFESEAVAMVPSGNCRVCDY 357
            ...||   |.|..||.:.|..:.|..:   .|:|.|.....:.|.......:.::|      ||.
  Fly   194 AEGRF---VVTNRDLAVGDLVSVEEPF---CSTLLTPMRYIRCATCKRENYLTLIP------CDS 246

  Fly   358 CGITQFIPFPCIYCSNRLVVYCSRQCR-FKHAAIHAVECFGHQIELFESFGEVFGMPRLLQLAFR 421
            |            ||   .::||.:|: ......|..||     .:.:....:|.  ::..:|.|
  Fly   247 C------------CS---TMFCSEECKSIAMQTYHRYEC-----PIIDFLNRMFN--KIHCIALR 289

  Fly   422 MLITGL------PELLGHCRKKPTLSKLWSAINGGLQERQDIAYSAVLRLERLKEERPTDTVIAL 480
            ..:..|      .||:..|.::              |.:...|:.  |....|..|.....:..|
  Fly   290 TTLVALNIFPSIEELIDFCEQE--------------QNQDKCAFD--LNYNELTPEEHYRAIHGL 338

  Fly   481 ALAAHILSIYLSKCTTFFDQLEKSL-------------PTASRMSSAEWELLCAALLMRHIGQLR 532
            ....|:.|:        .|..::|:             |....:...|.......||.||:.   
  Fly   339 VTNQHLRSV--------SDLFQRSVVCAVLKHFIIEYTPVKEYLGGEEGVNFFTDLLFRHLQ--- 392

  Fly   533 HRSLTACRSFVLPADPH---VFSPLNEFQLWAAPMRLQEGHLHLLAGEVAVVSYSVYPDTLNLCR 594
                      ..|::.|   :...:||         .::...|         |...|. .|:|..
  Fly   393 ----------TSPSNMHGIDLVEQVNE---------TKDDQTH---------SSGAYA-FLSLIN 428

  Fly   595 HSCSSTICAKFSGRTVTALALLDLPAGSGIYNCFAGGNFQQLPREERTKQL-LESGIRCHCNACQ 658
            |||:......:.|.......|..:.||:.:|:.: |.:|....:|:|.|:| |:....|.|..|:
  Fly   429 HSCAPNTVRIYEGTKAYMFVLRPIKAGNVLYDNY-GAHFAICSKEQRLKRLSLQYRFDCKCEGCE 492

  Fly   659 LTH 661
            |.:
  Fly   493 LNY 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daoNP_001260462.1 TPR_11 165..235 CDD:290150 21/70 (30%)
TPR repeat 200..235 CDD:276809 11/34 (32%)
TPR repeat 243..270 CDD:276809 3/26 (12%)
zf-MYND 355..395 CDD:280009 9/40 (23%)
Smyd4-4NP_610730.1 TPR_11 67..138 CDD:290150 21/71 (30%)
zf-MYND 230..270 CDD:280009 11/60 (18%)
SET 363..463 CDD:279228 23/132 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1278034at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.