DRSC/TRiP Functional Genomics Resources

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Protein Alignment dao and smyd1a

DIOPT Version :9

Sequence 1:NP_001260462.1 Gene:dao / 34891 FlyBaseID:FBgn0028862 Length:882 Species:Drosophila melanogaster
Sequence 2:NP_991103.2 Gene:smyd1a / 321245 ZFINID:ZDB-GENE-030131-9825 Length:485 Species:Danio rerio


Alignment Length:350 Identity:65/350 - (18%)
Similarity:110/350 - (31%) Gaps:109/350 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 LHTTRAVAKNALIF--ESEAVAMVPSGNCRVCDYCGITQFIPFPCIYCSNRLVVYCSRQCRFKHA 388
            |..||.::...::|  .|.|..::.|.:.:||..|...|..|..|..|  :...||.|.|:....
Zfish    21 LRGTRDLSAGEVVFAEASFAAVVLDSLSLQVCHSCFRRQVNPHRCAQC--KFAHYCDRTCQRAAW 83

  Fly   389 AIHAVECFGHQIELFESFGEVFGMPRLLQLAFRMLITGLPELLGHCRKKPTLSKLWSAI-NGGLQ 452
            ..|..||                                                 ||| |.|..
Zfish    84 DEHRKEC-------------------------------------------------SAIRNIGKA 99

  Fly   453 ERQDIAYSAVLRLERLKEERPTDTVIALALAAHILSIYLSKCTTFFDQLEKSLPTASRMSSAE-- 515
            ..:::...|.: |.|:::              |...:..|:.|| .|.||..|   |||:..:  
Zfish   100 PNENVRLVARI-LWRIQK--------------HTGLVSDSQLTT-LDMLEDHL---SRMTPEDLK 145

  Fly   516 ------------WELLCAALLMRHIGQLRHRSLTACRSFVLPADPHVFSPLNEFQLWAAPMRLQE 568
                        |.....|:...::..|  ..:.:|..|.|                :....||.
Zfish   146 ELKVDVKTFYTYWPKKSKAVGEDYVSHL--FGVISCNGFTL----------------SDQRGLQS 192

  Fly   569 GHLHLLAGEVAVVSYSVYPDTLNLCRHSCSSTICAKF-SGRTVTALALLDLPAGSGIYNCFAGGN 632
            ..:.|.. .:.:|::..:|:...:..|...|.:.|.| |.|.:...||..:.||..:...:.  :
Zfish   193 VGIGLFP-NLCLVNHDCWPNCTVILNHGDQSALDASFHSSRRIELRALEPISAGQELTVSYV--D 254

  Fly   633 FQQLPREERTKQLLESGIRCHCNAC 657
            |..:..:.:.....:....|.|..|
Zfish   255 FLSVSTDRQRLLQQQYYFDCKCEHC 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
daoNP_001260462.1 TPR_11 165..235 CDD:290150
TPR repeat 200..235 CDD:276809
TPR repeat 243..270 CDD:276809
zf-MYND 355..395 CDD:280009 11/39 (28%)
smyd1aNP_991103.2 zf-MYND 52..90 CDD:280009 11/39 (28%)
SET <203..252 CDD:279228 12/48 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582772
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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