DRSC/TRiP Functional Genomics Resources

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Protein Alignment dao and Smyd1

DIOPT Version :9

Sequence 1:NP_001260462.1 Gene:dao / 34891 FlyBaseID:FBgn0028862 Length:882 Species:Drosophila melanogaster
Sequence 2:NP_001153599.1 Gene:Smyd1 / 12180 MGIID:104790 Length:490 Species:Mus musculus


Alignment Length:394 Identity:75/394 - (19%)
Similarity:120/394 - (30%) Gaps:132/394 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 VERFEMAVQTGDDLDINDSKAFEIAWLDNSSSLHTTRAVAKNALIFESEAVAMVPSGNCRVCDYC 358
            :|..|:....|....:..:|.|   |.  :..:...||.  :|::|:|    ::..    ||..|
Mouse     6 MENVEVFTSEGKGRGLKATKEF---WA--ADVIFAERAY--SAVVFDS----LINF----VCHTC 55

  Fly   359 GITQFIPFPCIYCSNRLVVYCSRQCRFKHAAIHAVECFGHQIELFESFGEVFGMP-RLLQLAFRM 422
            ...|.....|..|  :...||.|.|:......|..||     ...:.:|:|   | ..::||.|:
Mouse    56 FKRQEKLHRCGQC--KFAHYCDRTCQKDAWLNHKNEC-----AAIKKYGKV---PNENIRLAARI 110

  Fly   423 LI------TGLPELLGHCRKKPTLSKLWSAINGGLQERQDIAYSAVLRLERLKEERPTDTVIALA 481
            :.      |||.|                   |.|....|:..    .:|...||...:..:.: 
Mouse   111 MWRVEREGTGLTE-------------------GCLVSVDDLQN----HVEHFGEEEQKELRVDV- 151

  Fly   482 LAAHILSIYLSKCTTFFDQLEKSLPTASRMSSAEWELLCAALLMRHI-GQLRHRSLTACRSFVLP 545
                             |...:..|..|:..|.::        :.|| |.:.      |..|.| 
Mouse   152 -----------------DTFLQYWPPQSQQFSMQY--------ISHIFGVIN------CNGFTL- 184

  Fly   546 ADPHVFSPLNEFQLWAAPMRLQEGHLHLLAGEVAVVSYSVYPDTLNLCRHSCSSTICAKFSGRTV 610
            :|                   |.|        :..|...::|: |.|..|.|.......|:....
Mouse   185 SD-------------------QRG--------LQAVGVGIFPN-LGLVNHDCWPNCTVIFNNGNH 221

  Fly   611 TAL-------------ALLDLPAGSGIYNCFAGGNFQQLPREERTKQLLESGIRCHCNACQLTHS 662
            .|:             ||..:..|..:...:.  :|..|..|.|.:...:....|.|..||....
Mouse   222 EAVKSMFHTQMRIELRALGKISEGEELTVSYI--DFLHLSEERRRQLKKQYYFDCSCEHCQKGLK 284

  Fly   663 DDQF 666
            ||.|
Mouse   285 DDLF 288

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
daoNP_001260462.1 TPR_11 165..235 CDD:290150
TPR repeat 200..235 CDD:276809
TPR repeat 243..270 CDD:276809
zf-MYND 355..395 CDD:280009 10/39 (26%)
Smyd1NP_001153599.1 SET_SMYD1 7..281 CDD:380924 71/384 (18%)
S-adenosyl-L-methionine binding 17..19 0/1 (0%)
zf-MYND 52..90 CDD:396356 10/39 (26%)