DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and VID22

DIOPT Version :9

Sequence 1:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_013477.1 Gene:VID22 / 851088 SGDID:S000004365 Length:901 Species:Saccharomyces cerevisiae


Alignment Length:638 Identity:129/638 - (20%)
Similarity:233/638 - (36%) Gaps:191/638 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   443 TSNQISQLNNLPS--------------FTENLRVLSLSGNNFSMIPVLGLKNYTQLSYLNMGYNS 493
            |:|.|:.|..:..              ..::|.::..|.|    :|:..:.|......:|...||
Yeast   151 TTNSIANLLEIDEDFLKRTREKEMALPLVQSLAIIIASEN----LPLSFVDNTAVRLLINQNANS 211

  Fly   494 ITDIPEGIF--AVDSWGSNLQTIL----LRNNKITHLHLGSFAGLEQIQEISLSFNDITIHHPLV 552
            ::.|...:.  |:.|...||..|:    ||||                       :|:::     
Yeast   212 LSFIDHDLILNAIRSIAYNLDRIIQRTALRNN-----------------------SDLSL----- 248

  Fly   553 FENVSRTLKILELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQMRELSYI 617
                     |::.::.:        :||.|....||         |.||   |:.| :|:::::.
Yeast   249 ---------IIDKNYLL--------MDPTDRSNQLS---------NRLK---NQLF-EMQKINFF 283

  Fly   618 NLS-------------------FNQLKTLPRGLFQSDAHSHLVEIDLSYNGLERLEAQTFHSLGD 663
            :||                   .:|:||||  |...:.|.:..:..||      :.||......:
Yeast   284 SLSHSVWNNTISILSIQYYDDFHSQVKTLP--LIIQNLHEYNNDPKLS------IPAQLLKISQE 340

  Fly   664 LQTLNLQSNRLRTIARHAFHNLEFLRYLDL------SYNRLVNISHGAFTVLPNLAAL------- 715
            |..|   .|.:.:|.......::.|..:|.      :|....|..|.....:.|.|.|       
Yeast   341 LPGL---QNTVISITLPRSQIVDLLNVMDSQPFFPNTYTNAKNYYHNCIISIINSAILPLFGTPK 402

  Fly   716 --DLMHNQLCSLS------LKSFLYVSNTTTPLRLNVSH---NHIASFYDELSSYMYIYQLDISH 769
              |:.|.:..|.|      |.|.:.:||      :::|:   :.|.||.|:|.|..  :|||...
Yeast   403 SADITHPRQSSFSKEPLTLLDSLIDLSN------IDISNSIFSRINSFLDDLQSNS--WQLDKFR 459

  Fly   770 NHVTK------------SDSFTNLANTLRFLNL---AHNQLGSLQSHAFGDLEFLEILNVAHNNL 819
            :...|            |...|...:...||||   ......|:|...|.:::| :|::.....|
Yeast   460 SLCEKFGFEFVCSKFDLSRYSTATVSLQTFLNLRPIIEEYQSSIQIEKFNEIDF-QIIDYLLITL 523

  Fly   820 TSLRRRSFQGLNSLQELDLSHNQLDQLQVEQ--FSNLRKLRILRINSNRLRALPREVFMNTRLEF 882
            .|: .|..:...|.:.|:.::.....:.:|:  .|.|..|:..|:      ..|.|.|::...||
Yeast   524 NSI-NRILKFFTSSKSLNFTYVLFAIMSIEKHLLSTLGSLQFQRL------IAPFETFLSKIQEF 581

  Fly   883 LDIA----ENQLSVWPVPAF----TDIGFTLRSIQMSHNNLEYLDASM------FINSQFLYDIS 933
            ..|.    .|.|:::..||.    ..:.::..:|.:| ..::.|..|:      |:|...:.:::
Yeast   582 KTILFSDDMNLLAMFLCPAILFEREVLEYSFHTISLS-EIVDKLSTSIFSLLKRFLNLHTIGNVN 645

  Fly   934 LARN-----RITILPDNTFSFLNNLT--NLDLSQNPLVTTNLREVFVHTPRLR 979
            .:.|     .:.|..||..:.:||.:  |.|.:.|.....|......:||..|
Yeast   646 NSHNTSNHSNMNIHTDNQTNNINNRSGNNSDNNDNEHDNDNDNHSNSNTPASR 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
LRR_8 265..322 CDD:290566
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380
LRR_RI 315..546 CDD:238064 23/122 (19%)
leucine-rich repeat 339..365 CDD:275380
LRR_8 365..424 CDD:290566
leucine-rich repeat 366..388 CDD:275380
leucine-rich repeat 389..412 CDD:275380
LRR_8 413..470 CDD:290566 7/40 (18%)
leucine-rich repeat 414..436 CDD:275380
leucine-rich repeat 437..459 CDD:275380 4/29 (14%)
leucine-rich repeat 460..483 CDD:275380 5/22 (23%)
LRR_8 482..545 CDD:290566 13/68 (19%)
leucine-rich repeat 484..510 CDD:275380 6/27 (22%)
leucine-rich repeat 511..534 CDD:275380 6/26 (23%)
leucine-rich repeat 535..589 CDD:275380 6/53 (11%)
LRR_RI 588..891 CDD:238064 79/366 (22%)
LRR_8 588..650 CDD:290566 18/80 (23%)
leucine-rich repeat 590..613 CDD:275380 6/22 (27%)
leucine-rich repeat 614..639 CDD:275380 9/43 (21%)
LRR_8 638..698 CDD:290566 11/65 (17%)
leucine-rich repeat 640..663 CDD:275380 4/22 (18%)
leucine-rich repeat 664..687 CDD:275380 4/22 (18%)
LRR_8 688..749 CDD:290566 17/84 (20%)
leucine-rich repeat 688..711 CDD:275380 5/28 (18%)
leucine-rich repeat 712..735 CDD:275380 8/37 (22%)
leucine-rich repeat 740..783 CDD:275380 13/57 (23%)
LRR_8 784..843 CDD:290566 14/61 (23%)
leucine-rich repeat 785..808 CDD:275380 7/25 (28%)
leucine-rich repeat 809..832 CDD:275380 4/22 (18%)
LRR_RI <827..1053 CDD:238064 36/176 (20%)
LRR_8 832..890 CDD:290566 14/63 (22%)
leucine-rich repeat 833..856 CDD:275380 4/24 (17%)
leucine-rich repeat 857..879 CDD:275380 5/21 (24%)
leucine-rich repeat 880..900 CDD:275380 7/27 (26%)
LRR_8 904..963 CDD:290566 15/71 (21%)
leucine-rich repeat 905..928 CDD:275380 6/28 (21%)
leucine-rich repeat 929..952 CDD:275380 4/27 (15%)
leucine-rich repeat 953..977 CDD:275380 5/25 (20%)
leucine-rich repeat 978..1020 CDD:275380 1/2 (50%)
LRR_8 1019..1074 CDD:290566
leucine-rich repeat 1045..1068 CDD:275380
leucine-rich repeat 1069..1090 CDD:275380
leucine-rich repeat 1091..1114 CDD:275380
leucine-rich repeat 1115..1161 CDD:275380
leucine-rich repeat 1162..1190 CDD:275380
VID22NP_013477.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4342
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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