DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and RLP12

DIOPT Version :9

Sequence 1:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_177296.2 Gene:RLP12 / 843481 AraportID:AT1G71400 Length:847 Species:Arabidopsis thaliana


Alignment Length:1099 Identity:234/1099 - (21%)
Similarity:372/1099 - (33%) Gaps:365/1099 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 DAQHDTL----------RSLHLSD------NDITEVAPGGGSIEVVSQNDNSSQPSSLAAVQT-- 235
            |.|.|.|          .|.|:.:      |..|:.....|    |:.||.|.|..||....|  
plant    36 DDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNG----VTCNDKSGQVISLDIPNTFL 96

  Fly   236 --RLETSNSIYPPSPSSGDRTTGGRPFEQLQKLLWLDLSNNRIYHVAGNYLPRSLVTMDLSSNLL 298
              .|:|::|::                 :||.|..|||:|..:|    ..:|.||..:.      
plant    97 NNYLKTNSSLF-----------------KLQYLRHLDLTNCNLY----GEIPSSLGNLS------ 134

  Fly   299 TVFPQQLFEQLPELRIVSLRDNLIRSVQWKELQVRPLRMHLERLDLGQNCIENLESDYFQQNYSD 363
                                                                             
plant   135 ----------------------------------------------------------------- 134

  Fly   364 VHLRALNLEQN-FVTQLPEAVFKATGIAHLVLAFNAISRVHPSAFEGLTETLEYLDLERNRLT-T 426
             ||..:||..| ||.::|.::.....:.||:||.|.::...||:...|:. |..|:|..|||. .
plant   135 -HLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSR-LVNLELFSNRLVGK 197

  Fly   427 VPVALSSLHHLKYLYLTSNQISQLNNLPSFTENLRVLSLSGNNFSMIPVLGLKNYTQLSYLNMGY 491
            :|.::..|..|:.|.|.||.:  :..:||...||                               
plant   198 IPDSIGDLKQLRNLSLASNNL--IGEIPSSLGNL------------------------------- 229

  Fly   492 NSITDIPEGIFAVDSWGSNLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDITIHHPLVFENV 556
                             |||..::|.:|::......|...|.:::.:|...|.::.:.|:.|.|:
plant   230 -----------------SNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANL 277

  Fly   557 SRTLKILELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQMRELSYINLSF 621
            ::      ||..|..:.:..|..|.|..:                         ...|.|.::|:
plant   278 TK------LSIFVLSSNNFTSTFPFDMSI-------------------------FHNLEYFDVSY 311

  Fly   622 NQLK-TLPRGLFQSDAHSHLVEIDLSYNGLERLEAQTFHSLGDLQTLNLQSNRLRTIARHAFHNL 685
            |... ..|:.|....:...:...:..:.|  .:|.....|...||.|.|..|||......:...|
plant   312 NSFSGPFPKSLLLIPSLESIYLQENQFTG--PIEFANTSSSTKLQDLILGRNRLHGPIPESISRL 374

  Fly   686 EFLRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCSLSLKSFLYVSNTTTPLRLNVSHNHIA 750
            ..|..||:|:|..........:.|.||..|||..|.| ...:.:.|:..||     :.:|||..:
plant   375 LNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNL-EGEVPACLWRLNT-----MVLSHNSFS 433

  Fly   751 SFYDELSSYMYIYQLDISHNHVTKSDSFTN-------LANTLRFLNLAHNQL-GSLQSHAFGDLE 807
            ||.:.......|.:||::      |:||..       ..::|.||:|::|.. ||:.|.......
plant   434 SFENTSQEEALIEELDLN------SNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSG 492

  Fly   808 FLEILNVAHNNLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRINSNRLRAL-P 871
            .::.||:..||.:......|.....|..||:|||||:....:...|.:.|.::.:.||:::.: |
plant   493 SIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFP 557

  Fly   872 REVFMNTRLEFLDIAENQLSVWPVPAFTDIGF-TLRSIQMSHNNLEYLDASMFINSQFLYDISLA 935
            ..:.....|..|::..|:...........||| :||.|.:||||..                   
plant   558 SWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFS------------------- 603

  Fly   936 RNRITILPDNTFSFLNNLTNLDLSQNPLVTTNLR--EVFVHTPRLRKLSLHHMGLYVLPPLKLPL 998
                ..||...||...::|.|....:..:|...|  :.:.|     ::.:.:.|:.         
plant   604 ----GTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYH-----EMEMVNKGVD--------- 650

  Fly   999 LSY---------LDVSGNYLQELSP--LGSLRHLRHVNVSHNKLTNASCAAEHLP------PSVR 1046
            :|:         :|.|||.:....|  ||.|:.||.:|:|.|..|:.      :|      ..:.
plant   651 MSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSV------IPRFLANLTKLE 709

  Fly  1047 VLDLAHNPLRRITLHDLASLRHLAELNILDVKVTNPQAFSKLRSLRKLHASSHANLGEIVARIPG 1111
            .||::.|.|......|||:|..|:.:|.                       ||..|...|.|  |
plant   710 TLDISRNKLSGQIPQDLAALSFLSYMNF-----------------------SHNLLQGPVPR--G 749

  Fly  1112 LQQLRVHCLEPNIGQQLFAKLANNTKIRLLELYGSNVQTIAPDVFTGLSRSQRLQVKISHTRISD 1176
            .|..|..|          :...:|.     .|||  ::.|..|  ||                  
plant   750 TQFQRQKC----------SSFLDNP-----GLYG--LEDICRD--TG------------------ 777

  Fly  1177 LPPGIFYALREVPHLSIDIS---HNRINALAADSFYPNKSYWDAVGTRSIMGGLITSHN 1232
                   ||.....|..|:|   .|..|.:||..     :|...|....::|...||||
plant   778 -------ALNPTSQLPEDLSEAEENMFNWVAAAI-----AYGPGVLCGLVIGHFYTSHN 824

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064 31/180 (17%)
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380 2/4 (50%)
leucine-rich repeat 195..214 CDD:275380 5/34 (15%)
leucine-rich repeat 215..236 CDD:275380 8/24 (33%)
LRR_8 265..322 CDD:290566 9/56 (16%)
leucine-rich repeat 266..287 CDD:275380 7/20 (35%)
leucine-rich repeat 288..311 CDD:275380 1/22 (5%)
leucine-rich repeat 312..338 CDD:275380 0/25 (0%)
LRR_RI 315..546 CDD:238064 42/232 (18%)
leucine-rich repeat 339..365 CDD:275380 0/25 (0%)
LRR_8 365..424 CDD:290566 20/59 (34%)
leucine-rich repeat 366..388 CDD:275380 7/22 (32%)
leucine-rich repeat 389..412 CDD:275380 8/22 (36%)
LRR_8 413..470 CDD:290566 17/57 (30%)
leucine-rich repeat 414..436 CDD:275380 8/22 (36%)
leucine-rich repeat 437..459 CDD:275380 7/21 (33%)
leucine-rich repeat 460..483 CDD:275380 1/22 (5%)
LRR_8 482..545 CDD:290566 9/62 (15%)
leucine-rich repeat 484..510 CDD:275380 0/25 (0%)
leucine-rich repeat 511..534 CDD:275380 5/22 (23%)
leucine-rich repeat 535..589 CDD:275380 11/53 (21%)
LRR_RI 588..891 CDD:238064 73/312 (23%)
LRR_8 588..650 CDD:290566 6/62 (10%)
leucine-rich repeat 590..613 CDD:275380 0/22 (0%)
leucine-rich repeat 614..639 CDD:275380 6/25 (24%)
LRR_8 638..698 CDD:290566 16/59 (27%)
leucine-rich repeat 640..663 CDD:275380 3/22 (14%)
leucine-rich repeat 664..687 CDD:275380 8/22 (36%)
LRR_8 688..749 CDD:290566 19/60 (32%)
leucine-rich repeat 688..711 CDD:275380 6/22 (27%)
leucine-rich repeat 712..735 CDD:275380 7/22 (32%)
leucine-rich repeat 740..783 CDD:275380 11/49 (22%)
LRR_8 784..843 CDD:290566 19/59 (32%)
leucine-rich repeat 785..808 CDD:275380 8/23 (35%)
leucine-rich repeat 809..832 CDD:275380 5/22 (23%)
LRR_RI <827..1053 CDD:238064 55/246 (22%)
LRR_8 832..890 CDD:290566 16/58 (28%)
leucine-rich repeat 833..856 CDD:275380 9/22 (41%)
leucine-rich repeat 857..879 CDD:275380 4/22 (18%)
leucine-rich repeat 880..900 CDD:275380 3/19 (16%)
LRR_8 904..963 CDD:290566 13/58 (22%)
leucine-rich repeat 905..928 CDD:275380 7/22 (32%)
leucine-rich repeat 929..952 CDD:275380 4/22 (18%)
leucine-rich repeat 953..977 CDD:275380 5/25 (20%)
leucine-rich repeat 978..1020 CDD:275380 10/52 (19%)
LRR_8 1019..1074 CDD:290566 16/60 (27%)
leucine-rich repeat 1045..1068 CDD:275380 8/22 (36%)
leucine-rich repeat 1069..1090 CDD:275380 2/20 (10%)
leucine-rich repeat 1091..1114 CDD:275380 6/22 (27%)
leucine-rich repeat 1115..1161 CDD:275380 10/45 (22%)
leucine-rich repeat 1162..1190 CDD:275380 2/27 (7%)
RLP12NP_177296.2 LRRNT_2 36..80 CDD:285463 10/47 (21%)
LRR_8 112..170 CDD:290566 22/133 (17%)
leucine-rich repeat 112..135 CDD:275380 9/98 (9%)
leucine-rich repeat 136..159 CDD:275380 7/22 (32%)
LRR_8 159..218 CDD:290566 21/59 (36%)
leucine-rich repeat 160..183 CDD:275380 8/22 (36%)
leucine-rich repeat 184..207 CDD:275380 8/22 (36%)
LRR_RI 198..479 CDD:238064 78/375 (21%)
LRR_8 206..266 CDD:290566 18/109 (17%)
leucine-rich repeat 208..231 CDD:275380 9/72 (13%)
leucine-rich repeat 232..255 CDD:275380 5/22 (23%)
leucine-rich repeat 256..279 CDD:275380 5/22 (23%)
leucine-rich repeat 280..352 CDD:275380 15/98 (15%)
leucine-rich repeat 304..322 CDD:275380 5/17 (29%)
LRR_8 351..411 CDD:290566 20/59 (34%)
leucine-rich repeat 353..376 CDD:275380 8/22 (36%)
LRR_RI 374..601 CDD:238064 65/238 (27%)
leucine-rich repeat 377..400 CDD:275380 6/22 (27%)
leucine-rich repeat 401..422 CDD:275380 7/21 (33%)
leucine-rich repeat 445..468 CDD:275380 6/28 (21%)
leucine-rich repeat 469..493 CDD:275380 8/23 (35%)
leucine-rich repeat 494..517 CDD:275380 5/22 (23%)
LRR_8 516..576 CDD:290566 16/59 (27%)
leucine-rich repeat 518..541 CDD:275380 9/22 (41%)
leucine-rich repeat 542..565 CDD:275380 4/22 (18%)
leucine-rich repeat 592..616 CDD:275380 11/46 (24%)
leucine-rich repeat 617..683 CDD:275380 15/79 (19%)
LRR_8 682..742 CDD:290566 19/88 (22%)
LRR_4 682..719 CDD:289563 10/42 (24%)
leucine-rich repeat 684..707 CDD:275380 7/28 (25%)
leucine-rich repeat 708..729 CDD:275380 7/20 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 118 1.000 Inparanoid score I2000
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.050

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