DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and GHR1

DIOPT Version :9

Sequence 1:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_001320016.1 Gene:GHR1 / 827842 AraportID:AT4G20940 Length:1037 Species:Arabidopsis thaliana


Alignment Length:754 Identity:172/754 - (22%)
Similarity:288/754 - (38%) Gaps:228/754 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   498 PEGIFAVDSWGSNLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDITIH----HPLVFENVSR 558
            |.| |.::||  |.::|             .|.|...      |:|.|..:    ..:|.:|:..
plant    23 PTG-FVLNSW--NDESI-------------DFNGCPS------SWNGIVCNGGNVAGVVLDNLGL 65

  Fly   559 TLKILELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQMRELSYINLSFNQ 623
            |   .:..|::|.              .|::|:.|.:.||:|..|........:.|.:::||.|.
plant    66 T---ADADFSLFS--------------NLTKLVKLSMSNNSLSGVLPNDLGSFKSLQFLDLSDNL 113

  Fly   624 L-KTLPRGLFQSDAHSHLVEIDLSYNGLERLEAQTFHSLGDLQTLNLQSNRLRTIARHAFHNLEF 687
            . .:||:.:.:|.:   |..:.||.|.......::...|..||:|::.||.|......:...|..
plant   114 FSSSLPKEIGRSVS---LRNLSLSGNNFSGEIPESMGGLISLQSLDMSSNSLSGPLPKSLTRLND 175

  Fly   688 LRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCSLSLKSFLYVSNTTTPLRLNVSHNHIASF 752
            |.||:||.|.........|.::.:|..|||..|.:.......|..::|                 
plant   176 LLYLNLSSNGFTGKMPRGFELISSLEVLDLHGNSIDGNLDGEFFLLTN----------------- 223

  Fly   753 YDELSSYMYIYQLDISHNHV--TKSDSFTNLANTLRFLNLAHNQL-GSLQSHAFGDLEFLEILNV 814
                :||     :|||.|.:  |.......::.:::.|||:|||| |||.|              
plant   224 ----ASY-----VDISGNRLVTTSGKLLPGVSESIKHLNLSHNQLEGSLTS-------------- 265

  Fly   815 AHNNLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRINSNRLR-ALPREVFM-- 876
                       .||...:|:.||||:|.|.. ::..|:.:..|.:|::::||.. :||..:..  
plant   266 -----------GFQLFQNLKVLDLSYNMLSG-ELPGFNYVYDLEVLKLSNNRFSGSLPNNLLKGD 318

  Fly   877 NTRLEFLDIAENQLSVWPVPAFTDIGFTLRSIQMSHNNLE-----------YLDASMFINSQFLY 930
            :..|..||::.|.||   .|..:.:..||.::.:|.|:|.           .||.|   |:||  
plant   319 SLLLTTLDLSGNNLS---GPVSSIMSTTLHTLDLSSNSLTGELPLLTGGCVLLDLS---NNQF-- 375

  Fly   931 DISLARNRITILPDNTFSFLNNLTNLDLSQNPLVTTNLREVFVHTPRLRKLSLHHMGLYVLPPLK 995
            :.:|.|          :|...|:..||||||                      |..|        
plant   376 EGNLTR----------WSKWENIEYLDLSQN----------------------HFTG-------- 400

  Fly   996 LPLLSYLDVSGNYLQELSPLGSLRHLRHVNVSHNKLTNASCAAEHLP---PSVRVLDLAHNPLRR 1057
                |:.|.:...|:          ..|:|:|:||||.:  ..|.:|   |.:||||::.|.|..
plant   401 ----SFPDATPQLLR----------ANHLNLSYNKLTGS--LPERIPTHYPKLRVLDISSNSLEG 449

  Fly  1058 ITLHDLASLRHLAELNILDVKVTN-----PQAFSKLRSLRKLHASSHANLGEIVARIPGLQQLRV 1117
            .....|.|:..|.|:::.:..:|.     |.:.|::|.|...|.....:|       ||      
plant   450 PIPGALLSMPTLEEIHLQNNGMTGNIGPLPSSGSRIRLLDLSHNRFDGDL-------PG------ 501

  Fly  1118 HCLEPNIGQQLFAKLANNTKIRLLELYGSNVQTIAPDVFTGLSRSQRLQVKISHTRISDLPPGIF 1182
                      :|..|.|   :::|.|..:|:....|.....:.....|.|..:|. ...||..:.
plant   502 ----------VFGSLTN---LQVLNLAANNLSGSLPSSMNDIVSLSSLDVSQNHF-TGPLPSNLS 552

  Fly  1183 YALREVPHLSIDISHNRINALAAD--------SFYPNKS 1213
            ..:     ::.::|:|.::....:        ||||..|
plant   553 SNI-----MAFNVSYNDLSGTVPENLKNFPPPSFYPGNS 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
LRR_8 265..322 CDD:290566
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380
LRR_RI 315..546 CDD:238064 11/47 (23%)
leucine-rich repeat 339..365 CDD:275380
LRR_8 365..424 CDD:290566
leucine-rich repeat 366..388 CDD:275380
leucine-rich repeat 389..412 CDD:275380
LRR_8 413..470 CDD:290566
leucine-rich repeat 414..436 CDD:275380
leucine-rich repeat 437..459 CDD:275380
leucine-rich repeat 460..483 CDD:275380
LRR_8 482..545 CDD:290566 11/46 (24%)
leucine-rich repeat 484..510 CDD:275380 5/11 (45%)
leucine-rich repeat 511..534 CDD:275380 3/22 (14%)
leucine-rich repeat 535..589 CDD:275380 9/57 (16%)
LRR_RI 588..891 CDD:238064 77/309 (25%)
LRR_8 588..650 CDD:290566 17/62 (27%)
leucine-rich repeat 590..613 CDD:275380 6/22 (27%)
leucine-rich repeat 614..639 CDD:275380 7/25 (28%)
LRR_8 638..698 CDD:290566 18/59 (31%)
leucine-rich repeat 640..663 CDD:275380 5/22 (23%)
leucine-rich repeat 664..687 CDD:275380 7/22 (32%)
LRR_8 688..749 CDD:290566 14/60 (23%)
leucine-rich repeat 688..711 CDD:275380 7/22 (32%)
leucine-rich repeat 712..735 CDD:275380 6/22 (27%)
leucine-rich repeat 740..783 CDD:275380 7/44 (16%)
LRR_8 784..843 CDD:290566 19/59 (32%)
leucine-rich repeat 785..808 CDD:275380 11/23 (48%)
leucine-rich repeat 809..832 CDD:275380 2/22 (9%)
LRR_RI <827..1053 CDD:238064 63/242 (26%)
LRR_8 832..890 CDD:290566 18/60 (30%)
leucine-rich repeat 833..856 CDD:275380 8/22 (36%)
leucine-rich repeat 857..879 CDD:275380 6/24 (25%)
leucine-rich repeat 880..900 CDD:275380 7/19 (37%)
LRR_8 904..963 CDD:290566 21/69 (30%)
leucine-rich repeat 905..928 CDD:275380 8/33 (24%)
leucine-rich repeat 929..952 CDD:275380 3/22 (14%)
leucine-rich repeat 953..977 CDD:275380 6/23 (26%)
leucine-rich repeat 978..1020 CDD:275380 5/41 (12%)
LRR_8 1019..1074 CDD:290566 20/57 (35%)
leucine-rich repeat 1045..1068 CDD:275380 8/22 (36%)
leucine-rich repeat 1069..1090 CDD:275380 5/25 (20%)
leucine-rich repeat 1091..1114 CDD:275380 5/22 (23%)
leucine-rich repeat 1115..1161 CDD:275380 7/45 (16%)
leucine-rich repeat 1162..1190 CDD:275380 5/27 (19%)
GHR1NP_001320016.1 PLN00113 2..1036 CDD:215061 172/754 (23%)
leucine-rich repeat 80..103 CDD:275380 6/22 (27%)
leucine-rich repeat 104..127 CDD:275380 7/22 (32%)
leucine-rich repeat 128..151 CDD:275380 5/22 (23%)
leucine-rich repeat 152..175 CDD:275380 7/22 (32%)
leucine-rich repeat 176..199 CDD:275380 7/22 (32%)
leucine-rich repeat 200..223 CDD:275380 6/22 (27%)
leucine-rich repeat 224..248 CDD:275380 7/28 (25%)
leucine-rich repeat 249..272 CDD:275380 13/47 (28%)
leucine-rich repeat 296..314 CDD:275380 6/17 (35%)
leucine-rich repeat 344..387 CDD:275380 13/57 (23%)
leucine-rich repeat 388..412 CDD:275380 11/67 (16%)
leucine-rich repeat 413..436 CDD:275380 9/24 (38%)
leucine-rich repeat 437..460 CDD:275380 8/22 (36%)
leucine-rich repeat 461..484 CDD:275380 4/22 (18%)
leucine-rich repeat 485..508 CDD:275380 8/45 (18%)
leucine-rich repeat 509..532 CDD:275380 4/22 (18%)
leucine-rich repeat 533..553 CDD:275380 5/20 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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