back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG4168 and RLP34

DIOPT Version :9

Sequence 1:	NP_001285953.1	Gene:	CG4168 / 34889	FlyBaseID:	FBgn0028888	Length:	1330	Species:	Drosophila melanogaster
Sequence 2:	NP_001326087.1	Gene:	RLP34 / 820272	AraportID:	AT3G11010	Length:	957	Species:	Arabidopsis thaliana

Alignment Length:	1027	Identity:	243/1027 - (23%)
Similarity:	389/1027 - (37%)	Gaps:	301/1027 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly   235 TRLETSNSIYPPSPSSGDRTTGGRPFEQLQKLLWLDLSNNR----IYHVAGNYLPRSLVTMDLSS 295
            |.|:.|::.:     .|..|:.   .|.|..|..||||.||    |.:..|| |.| |.::|||.
plant   124 TTLDRSHNDF-----EGQITSS---IENLSHLTSLDLSYNRFSGQILNSIGN-LSR-LTSLDLSF 178

  Fly   296 NLLTVFPQQLFEQLPELRIVSLRDNLIRSVQWKELQVRPLRMHLERLDLGQNCIENLESDYFQQN 360
            |       |...|:|     |...||               .||..|.|..|       .:|.|.
plant   179 N-------QFSGQIP-----SSIGNL---------------SHLTFLGLSGN-------RFFGQI 209

  Fly   361 YSDV----HLRALNLEQN-FVTQLPEAVFKATGIAHLVLAFNAISRVHPSAFEGLTETLE-YLDL 419
            .|.:    ||..|.|..| |..|.|.::...:.:.:|.|::|..|...||:...|::.:. ||.:
plant   210 PSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSV 274

  Fly   420 ERNRLTTVPVALSSLHHLKYLYLTSNQISQLNNLPSFTEN---LRVLSLSGNNFS-MIPVLGLKN 480
             .|....:|.:..:|:.|..|.::.|::.  .|.|:...|   |.|:|||.|.|: .:|    .|
plant   275 -NNFYGEIPSSFGNLNQLTRLDVSFNKLG--GNFPNVLLNLTGLSVVSLSNNKFTGTLP----PN 332

  Fly   481 YTQLSYLNMGY---NSIT-DIPEGIFAVDSWGSNLQTILLRNNKIT-HLHLGSFAGLEQIQEISL 540
            .|.||.|...|   |:.| ..|..:|.:.|    |..:.|..|::. .|..|:.:....:|.:::
plant   333 ITSLSNLMAFYASDNAFTGTFPSFLFIIPS----LTYLGLSGNQLKGTLEFGNISSPSNLQYLNI 393

  Fly   541 SFNDITIHHPLVFENVSRTLKILEL------------SFAVFPARSLESLDPLDALLPLSQLIWL 593
            ..|:.....|   .::|:.:.:.||            .|::|  ..|:|||.    |.||.|...
plant   394 GSNNFIGPIP---SSISKLINLQELGISHLNTQCRPVDFSIF--SHLKSLDD----LRLSYLTTT 449

  Fly   594 GLDNNNLKQVSNESFAQMRELSYINLSFNQLKTLPRGLFQSDAHSHLVE-IDLSYNGL----ERL 653
            .:|.|::       ....:.|..::||.|.:....:....||..|..:: :.||..|:    |.|
plant   450 TIDLNDI-------LPYFKTLRSLDLSGNLVSATNKSSVSSDPPSQSIQSLYLSGCGITDFPEIL 507

  Fly   654 EAQTFHSLGDLQTLNLQSNRLRTIARHAFHNLEFLRYLDLSYNRLVNISHGAFTVLPNLAALDLM 718
            ..|  |.||                           :||:|.|::.....|....||||..|:|.
plant   508 RTQ--HELG---------------------------FLDVSNNKIKGQVPGWLWTLPNLFYLNLS 543

  Fly   719 HNQLCSLSLKSFLYVSNTTTP----LRLNVSHNH----IASFYDELSSYMYIYQLDISHNHVTKS 775
            :|        :|:.....|.|    ..|..|:|:    |.||..||.|   :|.||:|.|:.:.|
plant   544 NN--------TFIGFQRPTKPEPSMAYLLGSNNNFTGKIPSFICELRS---LYTLDLSDNNFSGS 597

  Fly   776 --DSFTNLANTLRFLNLAHNQL-GSLQSHAFGDLEFLEILNVAHNNLTSLRRRSFQGLNSLQELD 837
              ....||.:.|..|||..|.| |....|.|   |.|..|:|.||.|.....||.:..::|:.|:
plant   598 IPRCMENLKSNLSELNLRQNNLSGGFPEHIF---ESLRSLDVGHNQLVGKLPRSLRFFSNLEVLN 659

  Fly   838 LSHNQLDQLQVEQFSNLRKLRILRINSNRLRALPREVFMNTRLEFLDIAENQLS-VWPVPAFTDI 901
            :..|:::.:.....|:|:||::|.:.||.... |....:..:|..:||:.|..: ..|...|.:.
plant   660 VESNRINDMFPFWLSSLQKLQVLVLRSNAFHG-PINQALFPKLRIIDISHNHFNGSLPTEYFVEW 723

  Fly   902 GFTLRSIQMSH-------NNLEYLDASMFINSQFLYDISLARNRITILPDNTFSFLNNLTNLDLS 959
            .      :||.       :|:.||.:..:.:|..|.:..:....:.|
plant   724 S------RMSSLGTYEDGSNVNYLGSGYYQDSMVLMNKGVESELVRI------------------ 764

  Fly   960 QNPLVTTNLREVFVHTPRLRKLSLHHMGLYVLPPLKLPLLSYLDVSGNYLQELSP--LGSLRHLR 1022
                                                |.:.:.:|.|||..:...|  :|.|:.|.
plant   765 ------------------------------------LTIYTAVDFSGNKFEGEIPKSIGLLKELH 793

  Fly  1023 HVNVSHNKLTNASCAAEHLPPSV------RVLDLAHNPLRRITLHDLASLRHLAELNILDVKVTN 1081
            .:|:|:|..|.      |:|.|:      ..||::.|.|......::.:|..|:.:|.
plant   794 VLNLSNNAFTG------HIPSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLSYMNF------- 845

  Fly  1082 PQAFSKLRSLRKLHASSHANLGEIVARIPGLQQL---RVHCLEPNIGQQLFAKLANNTKIRLLEL 1143
                            ||   .::...:||.||.   |....|.|:|                 |
plant   846 ----------------SH---NQLTGLVPGGQQFLTQRCSSFEGNLG-----------------L 874

  Fly  1144 YGSNVQTIAPDVFTGLSRSQRLQVKISHTRISDL----------PPGIFYAL 1185
            :||:::.:..|:.|..|. |:.:...:.....||          .|||.:.|
plant   875 FGSSLEEVCRDIHTPASH-QQFETPQTEEEDEDLISWIAAAIGFGPGIAFGL 925

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.