DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and CG4950

DIOPT Version :9

Sequence 1:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster


Alignment Length:594 Identity:139/594 - (23%)
Similarity:252/594 - (42%) Gaps:128/594 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   501 IFAVDSWGSNLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDITIHHP--LVFENVS-----R 558
            |.|:.|...:...|.||.::...:      |...:.|...:....|:.|.  :|.:|:.     :
  Fly    15 ILAISSCDGSGGDIPLRCDEYDSM------GYMDVNEAFCTVTGFTVTHSQNVVIKNIPPGNMVK 73

  Fly   559 TLKILELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQMRELSYINLSFNQ 623
            .:|..|.:....|....|:...|..         |.:.|.|:.:::..:|:....|:|:||::|.
  Fly    74 FMKFYESTLLYMPFHLFETFPYLKT---------LDVSNTNILELTRNAFSAASNLTYLNLAYNN 129

  Fly   624 LKTLPRGLFQSDAHSHLVEIDLSYNGLERLEAQTFHSLGDLQTLNLQSNRLRTIARHAFHNLEFL 688
            |.::...:|  ...:.|:.:|||||.:..|....|..|..:..:.|..|.|:.:....|.:.|:|
  Fly   130 LTSIQTSVF--IGANVLMRLDLSYNEISSLSVNAFCGLHTISQIYLTGNLLKELHNDIFKDNEYL 192

  Fly   689 RYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCSLSLKSFLYVSNTTTPLRLNVSHNHIASFY 753
            ..:....|.|.:|....|..:..:..::|.:|:|..:...:|   ::..:...|.:|:|.:.:| 
  Fly   193 EKVSFEGNLLTSIQPEVFRNMRRIKEVNLSNNRLIFIHPDTF---ADAASLENLVLSYNELKNF- 253

  Fly   754 DELSSYMYIYQLDISHNHVTKSDSFTNLA-NTLRFLNLAHNQLGSLQSHAFGDLEFLEILNVAHN 817
             :|:....::||.:.:|::      |||. |..||:..:|||:..|..|   ....:|.|:::.|
  Fly   254 -QLTEKNIVHQLHLDNNYL------TNLTINATRFVRASHNQISELFLH---QSLHIETLDLSAN 308

  Fly   818 NLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRINSNRLRALPREVFMNTR-LE 881
            .|:|:  .:...:..:..||:|.|.:..|.:..||.|::||.|.:....:|.|...:|...: ||
  Fly   309 KLSSI--SNITNITHMLYLDVSDNPIGPLNISTFSQLKRLRGLNLRGTGIRELKFGMFSKQKYLE 371

  Fly   882 FLDIAENQLSVWPVPAFTDIGFTLRSIQMSHNNLEYLDASMFIN-----SQFLYDISLARNRITI 941
            .||                         :|.|||..|:..||:.     .:||.|    .|.:|.
  Fly   372 ELD-------------------------LSFNNLTILNLDMFVPYLTNLKKFLID----GNGLTE 407

  Fly   942 LPDN-TFSFLNNLTNLDLSQNPLVTTNLREVFVHTPRLRKLS----------LHHMGLYVLPPLK 995
            |..| |||                     |.|   |:|:||.          |||:   ::|| .
  Fly   408 LQGNRTFS---------------------EAF---PQLQKLGVSRNRFNCSYLHHL---LIPP-S 444

  Fly   996 LPLLSYLDVSGNYLQELSPLGSLRHLRHVN-VSHN-KLTNASCAAEH--LPPSVRV----LDLAH 1052
            ||....|::..:...:.:|     |:|.|: :|.: ::.|||..||.  |...:::    ||:..
  Fly   445 LPESVVLNIEPDTNLDETP-----HIRDVSCISQSQEVVNASFTAEESKLESQIQMLSKQLDIVG 504

  Fly  1053 NPLRRITLH 1061
            :..:.:.||
  Fly   505 SHSKNLELH 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
LRR_8 265..322 CDD:290566
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380
LRR_RI 315..546 CDD:238064 8/44 (18%)
leucine-rich repeat 339..365 CDD:275380
LRR_8 365..424 CDD:290566
leucine-rich repeat 366..388 CDD:275380
leucine-rich repeat 389..412 CDD:275380
LRR_8 413..470 CDD:290566
leucine-rich repeat 414..436 CDD:275380
leucine-rich repeat 437..459 CDD:275380
leucine-rich repeat 460..483 CDD:275380
LRR_8 482..545 CDD:290566 8/43 (19%)
leucine-rich repeat 484..510 CDD:275380 3/8 (38%)
leucine-rich repeat 511..534 CDD:275380 4/22 (18%)
leucine-rich repeat 535..589 CDD:275380 10/60 (17%)
LRR_RI 588..891 CDD:238064 76/304 (25%)
LRR_8 588..650 CDD:290566 17/61 (28%)
leucine-rich repeat 590..613 CDD:275380 4/22 (18%)
leucine-rich repeat 614..639 CDD:275380 7/24 (29%)
LRR_8 638..698 CDD:290566 16/59 (27%)
leucine-rich repeat 640..663 CDD:275380 9/22 (41%)
leucine-rich repeat 664..687 CDD:275380 4/22 (18%)
LRR_8 688..749 CDD:290566 12/60 (20%)
leucine-rich repeat 688..711 CDD:275380 5/22 (23%)
leucine-rich repeat 712..735 CDD:275380 4/22 (18%)
leucine-rich repeat 740..783 CDD:275380 11/43 (26%)
LRR_8 784..843 CDD:290566 16/58 (28%)
leucine-rich repeat 785..808 CDD:275380 7/22 (32%)
leucine-rich repeat 809..832 CDD:275380 5/22 (23%)
LRR_RI <827..1053 CDD:238064 62/250 (25%)
LRR_8 832..890 CDD:290566 18/58 (31%)
leucine-rich repeat 833..856 CDD:275380 8/22 (36%)
leucine-rich repeat 857..879 CDD:275380 6/21 (29%)
leucine-rich repeat 880..900 CDD:275380 4/19 (21%)
LRR_8 904..963 CDD:290566 17/64 (27%)
leucine-rich repeat 905..928 CDD:275380 7/27 (26%)
leucine-rich repeat 929..952 CDD:275380 9/23 (39%)
leucine-rich repeat 953..977 CDD:275380 2/23 (9%)
leucine-rich repeat 978..1020 CDD:275380 12/51 (24%)
LRR_8 1019..1074 CDD:290566 14/51 (27%)
leucine-rich repeat 1045..1068 CDD:275380 4/21 (19%)
leucine-rich repeat 1069..1090 CDD:275380
leucine-rich repeat 1091..1114 CDD:275380
leucine-rich repeat 1115..1161 CDD:275380
leucine-rich repeat 1162..1190 CDD:275380
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 5/31 (16%)
LRR_8 118..178 CDD:290566 18/61 (30%)
leucine-rich repeat 120..143 CDD:275380 7/24 (29%)
leucine-rich repeat 144..167 CDD:275380 9/22 (41%)
leucine-rich repeat 168..191 CDD:275380 4/22 (18%)
LRR_8 192..250 CDD:290566 12/60 (20%)
leucine-rich repeat 192..215 CDD:275380 5/22 (23%)
LRR_RI <207..432 CDD:238064 70/293 (24%)
leucine-rich repeat 216..239 CDD:275380 4/25 (16%)
leucine-rich repeat 240..299 CDD:275380 19/69 (28%)
LRR_8 299..356 CDD:290566 16/58 (28%)
leucine-rich repeat 300..321 CDD:275380 5/22 (23%)
leucine-rich repeat 322..345 CDD:275380 8/22 (36%)
LRR_8 344..405 CDD:290566 21/89 (24%)
leucine-rich repeat 346..365 CDD:275380 5/18 (28%)
leucine-rich repeat 370..394 CDD:275380 11/48 (23%)
leucine-rich repeat 395..420 CDD:275380 12/52 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453640
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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