DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4168 and caps

DIOPT Version :9

Sequence 1:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster


Alignment Length:866 Identity:196/866 - (22%)
Similarity:322/866 - (37%) Gaps:231/866 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 CPLNSMCQCAGLPNETSTLIEINCNEVALYKFPEFMHSSVRYIEMSNTHLQSVDDE-------TF 117
            ||  :.|:|     :..||: :||.|..|...|..::.:::.:.:.|..|:::|..       ||
  Fly    43 CP--NGCEC-----DDDTLM-VNCGEGTLDVLPIALNPAIQRLVIKNNKLKTIDSSMQFYAQLTF 99

  Fly   118 QGL-----------------RLKTLKLIDNELQDISERSFSTMTHSLMTLDISGNKMQHLPLDAL 165
            ..|                 :|:.|.|..|::..:|.::|..:: ::..|::.||.:..|.....
  Fly   100 LDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLS-TISVLNLRGNLIAELEYRTF 163

  Fly   166 QRLHSLSRLVAQRNHITTLDGNWDAQHDTLRSLHLSDNDITEVAPGGGSIEVVSQNDNSSQPSSL 230
            ..:..|:.|...:|.|:.:|.:.....|.||.|:|.||.:|.| ||..:.:.:         .||
  Fly   164 SPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTV-PGELTFQAL---------HSL 218

  Fly   231 AAVQTRLETSNSIYPPSPSSGDRTTGGRPFEQLQKLLWLDLSNNRIYHVAGNYLPRSLVT---MD 292
            |  :..|.|::.:          |..|..|:.|:.|..|||....:::::|:.| :.||:   :|
  Fly   219 A--ELYLGTNSFM----------TIPGGAFQDLKGLTRLDLRGAGLHNISGDAL-KGLVSLRFLD 270

  Fly   293 LSSNLLTVFPQQLFEQLPELRIVSLRDNLIRSVQWKELQVRPLRMHLERLDLGQNCIENLESDYF 357
            ||.|.|...|...|::|.                           .||:|::|||..|.:.|..|
  Fly   271 LSDNRLPAIPTAAFQRLG---------------------------RLEQLNIGQNDFEVISSGAF 308

  Fly   358 QQNYSDVHLRALNLEQNFVTQLPEAVFKATGIAHLVL-AFNAISRVHPSAFEGLTETLEYLDLER 421
            .      .||.|.                    ||.| ....:.||...||.|.| .||:|:|..
  Fly   309 S------GLRELR--------------------HLELTGAQRLRRVESGAFSGNT-NLEHLNLSS 346

  Fly   422 NR----LTTVPVALSSLHHLKYLYLTSNQISQLNNLPSFTENLRVLSLSGNNFS-------MIPV 475
            |:    |::  :||..|.||..:.|.:||:|.|:.......:|:.|.||.|.|.       :..:
  Fly   347 NKQLNELSS--IALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPFECDCRLLWLRHL 409

  Fly   476 LGLKNYT-QLSYLNMGY-NSITDIP-----EGIFAVDSWGSNLQTIL------------------ 515
            |..:|.: |.:.:...| .::.|:|     |.:.......::.|.|:                  
  Fly   410 LVSRNASGQYAPVICAYPTALRDLPLAHLAEPLLGCAHGAASKQAIIGILVVACAALITTLALVL 474

  Fly   516 -LRNNKITHLHLGSFAGLEQIQEISLSFNDIT-----------IH-----HPLVFENVSRTLKIL 563
             ...::|..:..|..|...:.:|...:|:|..           :|     :|.:..| ||.:.:.
  Fly   475 YTCRHRIREMLKGHSALGRKEREYQKTFSDEEYMSRPPPGGGGVHPAAGGYPYIAGN-SRMIPVT 538

  Fly   564 ELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQMRELSYINLSFNQLKTLP 628
            ||.....|...|............|..:......:.:.|.|| ||||:..:.|:..:..|.:...
  Fly   539 ELXLEAPPPPQLRGRGGGGGASTASGAVQQLQVPSAVDQASN-SFAQLSHIHYMTNNGQQQQAQQ 602

  Fly   629 RGLFQSDAHSHLVEID---LSYNGLERLEAQTF--HSLGDLQTLNLQ------SNRLRTIARHAF 682
            :   ||.:..|..:.|   |:.||.:.|.|.:.  |....:|...|.      :|.:|....|..
  Fly   603 Q---QSTSKMHHSQQDMRLLACNGGKPLNATSLPRHRPPVVQESTLSHYSQPLANGIRLTQDHFN 664

  Fly   683 HNLEFLRYLDLSYNRLVNISHGAFTVLPNLAALD---LMHNQLCSLSLKSFLYVSNTTT------ 738
            ||          .|:..|..:|.....|..|..:   :.:|...||.|...|..|.|.|      
  Fly   665 HN----------QNQSHNQHYGGVYAKPCDAMSEPGYIHNNSHYSLPLDHDLPPSPTPTPPPPAL 719

  Fly   739 PLRLNVSHNHIASFYDELSSYMYIYQLDISHNHVTKSDSFTNLANTLRFLNLAHNQLGSLQSHAF 803
            |||..|.                   :.:.|.:.|...||.|..|.....|..|:.:|.....|.
  Fly   720 PLRNGVG-------------------MALIHGNTTGRRSFNNNNNVSTLSNNNHHGIGGGVGVAV 765

  Fly   804 GDLEFLEILNVAHNNLTSLRR 824
            |        ....||..||||
  Fly   766 G--------GTVGNNNGSLRR 778

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380 4/25 (16%)
LRR_8 121..181 CDD:290566 13/59 (22%)
LRR_RI 122..350 CDD:238064 57/230 (25%)
leucine-rich repeat 122..146 CDD:275380 6/23 (26%)
leucine-rich repeat 147..170 CDD:275380 4/22 (18%)
leucine-rich repeat 171..194 CDD:275380 5/22 (23%)
leucine-rich repeat 195..214 CDD:275380 10/18 (56%)
leucine-rich repeat 215..236 CDD:275380 3/20 (15%)
LRR_8 265..322 CDD:290566 16/59 (27%)
leucine-rich repeat 266..287 CDD:275380 6/20 (30%)
leucine-rich repeat 288..311 CDD:275380 10/25 (40%)
leucine-rich repeat 312..338 CDD:275380 0/25 (0%)
LRR_RI 315..546 CDD:238064 58/268 (22%)
leucine-rich repeat 339..365 CDD:275380 9/25 (36%)
LRR_8 365..424 CDD:290566 17/63 (27%)
leucine-rich repeat 366..388 CDD:275380 3/21 (14%)
leucine-rich repeat 389..412 CDD:275380 8/23 (35%)
LRR_8 413..470 CDD:290566 21/60 (35%)
leucine-rich repeat 414..436 CDD:275380 9/25 (36%)
leucine-rich repeat 437..459 CDD:275380 6/21 (29%)
leucine-rich repeat 460..483 CDD:275380 8/30 (27%)
LRR_8 482..545 CDD:290566 12/88 (14%)
leucine-rich repeat 484..510 CDD:275380 4/31 (13%)
leucine-rich repeat 511..534 CDD:275380 5/41 (12%)
leucine-rich repeat 535..589 CDD:275380 12/69 (17%)
LRR_RI 588..891 CDD:238064 61/257 (24%)
LRR_8 588..650 CDD:290566 16/64 (25%)
leucine-rich repeat 590..613 CDD:275380 7/22 (32%)
leucine-rich repeat 614..639 CDD:275380 4/24 (17%)
LRR_8 638..698 CDD:290566 16/70 (23%)
leucine-rich repeat 640..663 CDD:275380 7/27 (26%)
leucine-rich repeat 664..687 CDD:275380 7/28 (25%)
LRR_8 688..749 CDD:290566 17/69 (25%)
leucine-rich repeat 688..711 CDD:275380 3/22 (14%)
leucine-rich repeat 712..735 CDD:275380 6/25 (24%)
leucine-rich repeat 740..783 CDD:275380 8/42 (19%)
LRR_8 784..843 CDD:290566 11/41 (27%)
leucine-rich repeat 785..808 CDD:275380 5/22 (23%)
leucine-rich repeat 809..832 CDD:275380 6/16 (38%)
LRR_RI <827..1053 CDD:238064
LRR_8 832..890 CDD:290566
leucine-rich repeat 833..856 CDD:275380
leucine-rich repeat 857..879 CDD:275380
leucine-rich repeat 880..900 CDD:275380
LRR_8 904..963 CDD:290566
leucine-rich repeat 905..928 CDD:275380
leucine-rich repeat 929..952 CDD:275380
leucine-rich repeat 953..977 CDD:275380
leucine-rich repeat 978..1020 CDD:275380
LRR_8 1019..1074 CDD:290566
leucine-rich repeat 1045..1068 CDD:275380
leucine-rich repeat 1069..1090 CDD:275380
leucine-rich repeat 1091..1114 CDD:275380
leucine-rich repeat 1115..1161 CDD:275380
leucine-rich repeat 1162..1190 CDD:275380
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 3/20 (15%)
LRR_8 96..155 CDD:290566 12/59 (20%)
leucine-rich repeat 97..120 CDD:275380 3/22 (14%)
leucine-rich repeat 121..144 CDD:275380 6/23 (26%)
LRR_8 143..201 CDD:290566 14/58 (24%)
leucine-rich repeat 145..168 CDD:275380 4/22 (18%)
LRR_RI 147..397 CDD:238064 87/328 (27%)
leucine-rich repeat 169..192 CDD:275380 5/22 (23%)
leucine-rich repeat 193..217 CDD:275380 10/33 (30%)
LRR_8 217..276 CDD:290566 21/71 (30%)
leucine-rich repeat 218..241 CDD:275380 8/34 (24%)
leucine-rich repeat 242..265 CDD:275380 7/23 (30%)
LRR_8 265..321 CDD:290566 23/108 (21%)
leucine-rich repeat 266..289 CDD:275380 8/49 (16%)
leucine-rich repeat 290..313 CDD:275380 10/28 (36%)
LRR_8 312..374 CDD:290566 24/84 (29%)
leucine-rich repeat 314..335 CDD:275380 8/40 (20%)
leucine-rich repeat 339..363 CDD:275380 9/25 (36%)
LRRCT 395..445 CDD:214507 9/49 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453499
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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