DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and CG18480

DIOPT Version :9

Sequence 1:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_001285960.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster


Alignment Length:307 Identity:72/307 - (23%)
Similarity:135/307 - (43%) Gaps:54/307 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   551 LVFENVS--RTLKILELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQMRE 613
            |:..|:.  .|:::|:||:     ..:.::|. |:......|:.|.|.:|.:..:..::|.::..
  Fly    65 LISANIEIPTTVELLDLSY-----NDITTIDD-DSFKTTIHLLNLTLAHNAIHTLYGDAFVELTR 123

  Fly   614 LSYINLSFNQLKTLPRGLFQSDAHSHLVEIDLSYNGLERLEAQTFHSLGDLQTLNLQSNRLRTIA 678
            |.|::||:|:|:.:...:.:|  ::.|:.::|..|.|..|..........|::|||:::::..:.
  Fly   124 LRYLDLSYNRLEQIDEHILES--NNQLIHLNLEGNKLSTLGKGPILRSPSLRSLNLRNSQVNQLG 186

  Fly   679 RHAFHNLEFLRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQL-CSLSLKSFLYVSNTTTPLRL 742
            ......|..||.|||:.|.|:.:|.|.|....|||:|::..|.. |..:|      :...|.|| 
  Fly   187 TQLLSALPQLRQLDLAQNLLLTLSPGDFHAPRNLASLNVEENPFNCDRAL------AKVATGLR- 244

  Fly   743 NVSHNHIASFYDELSSYMYIYQLDISHNHVTKSDSFTNLANTLRFLNLAHNQLGSLQSHAFGDLE 807
               ...:|.|   :|:.|.....|  |....::.:|.|                  ::..|..:|
  Fly   245 ---QRGVAIF---MSNCMEEEVQD--HQDDAEAVNFPN------------------KNEKFESME 283

  Fly   808 FLEILNVAHNNLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNL 854
            :||.......::.|:.|          :||.|..|......||.|:|
  Fly   284 YLEPSTRGPQSVLSVWR----------DLDSSEEQNSSQDDEQMSSL 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
LRR_8 265..322 CDD:290566
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380
LRR_RI 315..546 CDD:238064
leucine-rich repeat 339..365 CDD:275380
LRR_8 365..424 CDD:290566
leucine-rich repeat 366..388 CDD:275380
leucine-rich repeat 389..412 CDD:275380
LRR_8 413..470 CDD:290566
leucine-rich repeat 414..436 CDD:275380
leucine-rich repeat 437..459 CDD:275380
leucine-rich repeat 460..483 CDD:275380
LRR_8 482..545 CDD:290566
leucine-rich repeat 484..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
leucine-rich repeat 535..589 CDD:275380 8/39 (21%)
LRR_RI 588..891 CDD:238064 64/268 (24%)
LRR_8 588..650 CDD:290566 15/61 (25%)
leucine-rich repeat 590..613 CDD:275380 5/22 (23%)
leucine-rich repeat 614..639 CDD:275380 7/24 (29%)
LRR_8 638..698 CDD:290566 16/59 (27%)
leucine-rich repeat 640..663 CDD:275380 5/22 (23%)
leucine-rich repeat 664..687 CDD:275380 5/22 (23%)
LRR_8 688..749 CDD:290566 20/61 (33%)
leucine-rich repeat 688..711 CDD:275380 10/22 (45%)
leucine-rich repeat 712..735 CDD:275380 6/23 (26%)
leucine-rich repeat 740..783 CDD:275380 10/42 (24%)
LRR_8 784..843 CDD:290566 9/58 (16%)
leucine-rich repeat 785..808 CDD:275380 1/22 (5%)
leucine-rich repeat 809..832 CDD:275380 4/22 (18%)
LRR_RI <827..1053 CDD:238064 8/28 (29%)
LRR_8 832..890 CDD:290566 8/23 (35%)
leucine-rich repeat 833..856 CDD:275380 8/22 (36%)
leucine-rich repeat 857..879 CDD:275380
leucine-rich repeat 880..900 CDD:275380
LRR_8 904..963 CDD:290566
leucine-rich repeat 905..928 CDD:275380
leucine-rich repeat 929..952 CDD:275380
leucine-rich repeat 953..977 CDD:275380
leucine-rich repeat 978..1020 CDD:275380
LRR_8 1019..1074 CDD:290566
leucine-rich repeat 1045..1068 CDD:275380
leucine-rich repeat 1069..1090 CDD:275380
leucine-rich repeat 1091..1114 CDD:275380
leucine-rich repeat 1115..1161 CDD:275380
leucine-rich repeat 1162..1190 CDD:275380
CG18480NP_001285960.1 LRR_8 74..134 CDD:290566 16/65 (25%)
LRR_RI <76..230 CDD:238064 42/161 (26%)
leucine-rich repeat 76..99 CDD:275380 5/28 (18%)
leucine-rich repeat 100..123 CDD:275380 5/22 (23%)
LRR_8 122..182 CDD:290566 16/61 (26%)
leucine-rich repeat 124..147 CDD:275380 7/24 (29%)
leucine-rich repeat 148..171 CDD:275380 5/22 (23%)
LRR_8 170..230 CDD:290566 20/59 (34%)
leucine-rich repeat 172..195 CDD:275380 5/22 (23%)
leucine-rich repeat 196..219 CDD:275380 10/22 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453627
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.