DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and CG16974

DIOPT Version :9

Sequence 1:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_001246018.1 Gene:CG16974 / 34713 FlyBaseID:FBgn0032479 Length:1257 Species:Drosophila melanogaster


Alignment Length:1023 Identity:226/1023 - (22%)
Similarity:332/1023 - (32%) Gaps:376/1023 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 LVTMDLSSNLLTVFPQQLFEQLPELRIVSLRDNLIRSVQWKELQVRPLRMH-------------- 338
            |.|...:...|...|||   ..|::|      ..||:.|..|..:...:.|              
  Fly    32 LATYSSAEAYLAQIPQQ---HRPQIR------PRIRTWQEHEFSLLGYKFHLPFVGHAVDSDLDD 87

  Fly   339 --------LERLDLGQNCIENLE------------SDYFQQNYSDVHLRALNLEQNFVTQLPEAV 383
                    |:..|.|...:|..|            .:.|:.|...|.||.:|  |..::|....:
  Fly    88 SDSDEGLWLDAADAGSESVEVEEHELPSVGHVDPTGNVFKLNCEHVDLRRVN--QELLSQRSSHI 150

  Fly   384 FKATGIAHLVLAFNAISRVHPSAFEGLTETLEYLDLERNRL---------TTVPVALSSLHHLKY 439
                ....|:||.....|.:|.....| |:|.....:.:.|         |..|   .|..:::.
  Fly   151 ----NYNQLMLAHVPADRSNPLKLPQL-ESLREFSWQSSELKDETLMELFTRQP---RSFEYMER 207

  Fly   440 LYLTSNQISQLN-NLPSFTENLRVLSLSGNNFSMIPVLGLKNYTQLSYLNMGYNSITDIPEGIFA 503
            |.|..|::..|: .:|.....::||.:|||..|           ..|.||:.|            
  Fly   208 LNLAENRLECLHWAIPLAVRRVKVLEMSGNRLS-----------NCSLLNLQY------------ 249

  Fly   504 VDSWGSNLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDITIHHPLVFENVSRTLKILELSFA 568
                                        ::|:||:.|..:::|                      
  Fly   250 ----------------------------MKQLQELHLDRSELT---------------------- 264

  Fly   569 VFPARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQMRELSYINLSFNQLKTLPRGLFQ 633
            ..|.|.|..         ||:|..|.|..|.|.::..:.|....:|..:.||.|:|..||..|||
  Fly   265 YLPQRFLGE---------LSELRMLNLSQNLLTELPRDIFVGALKLERLYLSGNRLSVLPFMLFQ 320

  Fly   634 SDAHSHLVEIDLSYNGLERLEAQTFHSLGDLQTLNLQSNRLRTIARHAFHNLEFLRYLDLSYNRL 698
            :.|  .|..:|||.|.|.......|...|.|:.|:||.|:|::|.:|:.::|..||.||||.|.|
  Fly   321 TAA--DLQVLDLSDNRLLSFPDNFFARNGQLRQLHLQRNQLKSIGKHSLYSLRELRQLDLSQNSL 383

  Fly   699 VNISHGAFTVLPNLAALDLMHNQLCSLSLKSFLYVSNTTTPLRLNVSHNHIASFYDELSSYMYIY 763
            ..|...||..|.:|.|                                                 
  Fly   384 SVIDRKAFESLDHLLA------------------------------------------------- 399

  Fly   764 QLDISHNHVTKSDSFTNLANTLRFLNLAHNQLGSLQSHAFGDLEFLEILNVAHNNLTSLRRRSFQ 828
                                                            |||:.||||.|....||
  Fly   400 ------------------------------------------------LNVSGNNLTLLSSIIFQ 416

  Fly   829 GLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRINSNRLRALPREVFMNTRLEFLDIAENQLSVW 893
            .|::|::||||.||..||....|...|.|.:|||:..     |.|.|.|               |
  Fly   417 SLHALRQLDLSRNQFKQLPSGLFQRQRSLVLLRIDET-----PIEQFSN---------------W 461

  Fly   894 PVPAFTDIGFTLRSIQMSHNNLEYLDASMFINSQFLYDISLARNRITILPDNTFSFLNNLTNLDL 958
                            :|.                 ||.||...::          |:.|..|.:
  Fly   462 ----------------ISR-----------------YDESLVDPQV----------LHRLRYLSV 483

  Fly   959 SQNPLVTTNLREVFVHTPRLRKLSLHHMGLYVLPP--LKLPLLSYLDVSGNYLQEL-SPLGSLRH 1020
            .||..:|.....:|.:||.:|:|.|...||..||.  ..|..|..|.|.||.|..| ..:..||.
  Fly   484 QQNRKLTYLPATLFANTPNIRELLLAENGLLQLPTQISGLSRLQRLSVRGNSLGSLPENIKELRQ 548

  Fly  1021 LRHVNVSHNK-------------LTNASCAAEHLPPSVRVLDLAHNPLRRITLHDLASLRHLAEL 1072
            |.::|:..|:             |.|.|.:..|..|..:  :.::....:..|....|:.|    
  Fly   549 LHYLNILGNEYQCDCSMYWLTAWLANTSTSLRHQMPQAQ--NHSNGSTNQTPLDSYESIDH---- 607

  Fly  1073 NILDVKVTNPQAFSKLRSLRKLHASSHANLGEIVARIPGLQQLRVHCLEPNIGQQLFAKLANNTK 1137
            .|..:|.........||.|.||:.|           :|.:.|..    ||.:     .||.:..|
  Fly   608 QIDALKCQYGYRGDMLRVLSKLNCS-----------VPTVVQFS----EPKM-----HKLLSTAK 652

  Fly  1138 IRLLELYGSNVQTIAPDVFTGLSRSQRLQVKISHTRISDLPPGIFYALREVPHLSIDISHNRINA 1202
            :. .::.||.|    ||:.....|::.|:    |....|..|.|..:..:        :|...:|
  Fly   653 LE-CQISGSPV----PDIIWVTPRNKILR----HHADPDKRPIIIDSKED--------AHQPPSA 700

  Fly  1203 --LAA--DSFYPNKSYW----DAVGTRSIM--GGLITSHNPLECECGL 1240
              |||  |..|.....|    ..||.|.::  .|.:..||....:.||
  Fly   701 QELAALMDESYIQSLNWTRQNSLVGRRVVLVENGSLLVHNISRIDSGL 748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064 16/83 (19%)
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
LRR_8 265..322 CDD:290566 8/33 (24%)
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380 6/22 (27%)
leucine-rich repeat 312..338 CDD:275380 5/25 (20%)
LRR_RI 315..546 CDD:238064 49/274 (18%)
leucine-rich repeat 339..365 CDD:275380 7/37 (19%)
LRR_8 365..424 CDD:290566 13/58 (22%)
leucine-rich repeat 366..388 CDD:275380 5/21 (24%)
leucine-rich repeat 389..412 CDD:275380 6/22 (27%)
LRR_8 413..470 CDD:290566 15/66 (23%)
leucine-rich repeat 414..436 CDD:275380 5/30 (17%)
leucine-rich repeat 437..459 CDD:275380 5/22 (23%)
leucine-rich repeat 460..483 CDD:275380 6/22 (27%)
LRR_8 482..545 CDD:290566 8/62 (13%)
leucine-rich repeat 484..510 CDD:275380 4/25 (16%)
leucine-rich repeat 511..534 CDD:275380 0/22 (0%)
leucine-rich repeat 535..589 CDD:275380 8/53 (15%)
LRR_RI 588..891 CDD:238064 79/302 (26%)
LRR_8 588..650 CDD:290566 23/61 (38%)
leucine-rich repeat 590..613 CDD:275380 6/22 (27%)
leucine-rich repeat 614..639 CDD:275380 11/24 (46%)
LRR_8 638..698 CDD:290566 24/59 (41%)
leucine-rich repeat 640..663 CDD:275380 7/22 (32%)
leucine-rich repeat 664..687 CDD:275380 9/22 (41%)
LRR_8 688..749 CDD:290566 14/60 (23%)
leucine-rich repeat 688..711 CDD:275380 12/22 (55%)
leucine-rich repeat 712..735 CDD:275380 2/22 (9%)
leucine-rich repeat 740..783 CDD:275380 0/42 (0%)
LRR_8 784..843 CDD:290566 17/58 (29%)
leucine-rich repeat 785..808 CDD:275380 0/22 (0%)
leucine-rich repeat 809..832 CDD:275380 11/22 (50%)
LRR_RI <827..1053 CDD:238064 62/241 (26%)
LRR_8 832..890 CDD:290566 19/57 (33%)
leucine-rich repeat 833..856 CDD:275380 10/22 (45%)
leucine-rich repeat 857..879 CDD:275380 8/21 (38%)
leucine-rich repeat 880..900 CDD:275380 1/19 (5%)
LRR_8 904..963 CDD:290566 10/58 (17%)
leucine-rich repeat 905..928 CDD:275380 1/22 (5%)
leucine-rich repeat 929..952 CDD:275380 5/22 (23%)
leucine-rich repeat 953..977 CDD:275380 7/23 (30%)
leucine-rich repeat 978..1020 CDD:275380 16/44 (36%)
LRR_8 1019..1074 CDD:290566 12/67 (18%)
leucine-rich repeat 1045..1068 CDD:275380 2/22 (9%)
leucine-rich repeat 1069..1090 CDD:275380 3/20 (15%)
leucine-rich repeat 1091..1114 CDD:275380 5/22 (23%)
leucine-rich repeat 1115..1161 CDD:275380 10/45 (22%)
leucine-rich repeat 1162..1190 CDD:275380 5/27 (19%)
CG16974NP_001246018.1 leucine-rich repeat 206..228 CDD:275380 5/21 (24%)
leucine-rich repeat 229..252 CDD:275380 10/73 (14%)
LRR_RI <246..433 CDD:238064 78/356 (22%)
LRR_8 251..311 CDD:290566 20/90 (22%)
leucine-rich repeat 253..276 CDD:275380 8/53 (15%)
leucine-rich repeat 277..300 CDD:275380 6/22 (27%)
leucine-rich repeat 301..324 CDD:275380 11/24 (46%)
LRR_8 325..383 CDD:290566 24/57 (42%)
leucine-rich repeat 325..348 CDD:275380 7/22 (32%)
leucine-rich repeat 349..372 CDD:275380 9/22 (41%)
LRR_RI 351..>557 CDD:238064 86/365 (24%)
LRR_8 371..431 CDD:290566 31/156 (20%)
leucine-rich repeat 373..396 CDD:275380 12/22 (55%)
leucine-rich repeat 397..420 CDD:275380 13/119 (11%)
leucine-rich repeat 421..444 CDD:275380 10/22 (45%)
LRR_8 477..536 CDD:290566 21/58 (36%)
leucine-rich repeat 478..502 CDD:275380 7/23 (30%)
leucine-rich repeat 503..526 CDD:275380 8/22 (36%)
Ig <714..761 CDD:299845 9/35 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453636
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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