DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4168 and Lrig2

DIOPT Version :9

Sequence 1:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_001101180.1 Gene:Lrig2 / 310753 RGDID:1309554 Length:1054 Species:Rattus norvegicus


Alignment Length:687 Identity:171/687 - (24%)
Similarity:310/687 - (45%) Gaps:111/687 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   324 SVQWKELQVRPLRMHLERLDLGQNCIEN----LESDYFQQNYSDVHLRALNLEQNFVTQLPEAVF 384
            ::.|:.|. .||...:..|||..|.:.|    |||:..|:         :.:..|.:|::|....
  Rat    62 ALSWRALS-GPLSPDISSLDLSHNRLSNWNISLESETLQE---------VKMNYNELTEIPYFGE 116

  Fly   385 KATGIAHLVLAFNAISRVHPSAFEGLTETLEYLDLERNRLTTVPVALSSLHHLKYLYLTSNQISQ 449
            ....|..|.|..|.|..::..||: |...||.|||..|.::.:..:......||||.|::|:|:.
  Rat   117 PTPNITQLSLVHNLIPEINAEAFQ-LYSALESLDLSSNIISEIKTSSFPRMSLKYLNLSNNRITT 180

  Fly   450 L-----NNLPSFTENLRVLSLSGNNFSMIPVLGLKNYTQLSYLNMGYNSITDIPEGIF--AVDSW 507
            |     :||   :.:|.|:.|:.|..||||....| ...|.:|.:..|.| .|.||:.  .:|| 
  Rat   181 LEAGCFDNL---SGSLLVVKLNRNRISMIPPKVFK-LPHLQFLELKRNRI-KIVEGLTFQGLDS- 239

  Fly   508 GSNLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDIT-IHHPLVFENVSRTLKILELSFAVFP 571
               |:::.::.|.|:.|..|:|.||..::|:.|..|::| :|...::     .|::|:..:.  .
  Rat   240 ---LRSLKMQRNGISKLKDGAFFGLNNMEELELEHNNLTGVHKGWLY-----GLRMLQQLYV--S 294

  Fly   572 ARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQMRELSYINLSFNQLKTLPRGLFQSDA 636
            ..::|.:.| ||.....:|..|.|..|.|.::...:|..:..|..:||..|::..:..|:|:  .
  Rat   295 QNAIEKISP-DAWEFCQRLSALDLSYNQLTRLDESAFVGLSLLERLNLGDNRVTHIADGVFR--F 356

  Fly   637 HSHLVEIDLSYNGLE-RLE--AQTFHSLGDLQTLNLQSNRLRTIARHAFHNLEFLRYLDLSYNRL 698
            .|:|..:||..|.:. .:|  ::.|..|..|..|.||.||::::.:.||..||.|.||||:.|.:
  Rat   357 LSNLQTLDLRNNEISWAIEDASEVFSGLKSLTKLILQGNRIKSVTQKAFVGLESLEYLDLNNNAI 421

  Fly   699 VNISHGAFT------VLPNLAALDLMHNQLCSLSLKSFL--YVSNTTTPLRLNVSHN-HIASFYD 754
            ::|...||:      ::.|.::|      ||...||..|  .|.|       |..|: :::..:.
  Rat   422 MSIQENAFSQTHLKELVLNTSSL------LCDCHLKWLLQWLVDN-------NFHHSVNVSCAHP 473

  Fly   755 ELSSYMYIYQLDISH---NHVTKSDSFTNLANT--LRFLNLAHNQLGSLQSHAFGDLEFLEILNV 814
            |..:...|..:|:..   :...|....|:..||  ||.:|:      :|...|         ::.
  Rat   474 EWLAGQSILNVDLKDFVCDDFLKPQIRTHPENTVALRGVNV------TLMCTA---------VSS 523

  Fly   815 AHNNLTSLRRRSFQGLNSLQELDLS----HNQLDQLQVEQFSNLRKLRILRINSNRLRALPREVF 875
            :.:.:::|.|:..:   .|.::|:.    :.|.|...:|..|.||...:...:..:.:.:....|
  Rat   524 SDSPMSTLWRKDSE---ILYDVDIENFVRYRQQDGEALEYTSVLRLFSVNFTDEGKYQCIVTNHF 585

  Fly   876 MNTRLEFLDIAENQLSVWPVPAF--TDIGFTLRSIQMSHNNLEYLDASMFINSQFLY------DI 932
            .:...:     :.:|:|..:|:|  |.:..|:|:..|:  .|| ..|......|..:      |.
  Rat   586 GSNYSQ-----KAKLTVNEMPSFLKTPMDLTIRTGAMA--RLE-CAAEGHPTPQISWQKDGGTDF 642

  Fly   933 SLAR-NRITILPDNTFSFLNNLTNLDLSQNPLVTTNL 968
            ..|| .|:.::|::...|:.|:...|:.....:..|:
  Rat   643 PAARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNI 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064 8/25 (32%)
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
LRR_8 265..322 CDD:290566
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380 4/13 (31%)
LRR_RI 315..546 CDD:238064 69/232 (30%)
leucine-rich repeat 339..365 CDD:275380 9/29 (31%)
LRR_8 365..424 CDD:290566 17/58 (29%)
leucine-rich repeat 366..388 CDD:275380 3/21 (14%)
leucine-rich repeat 389..412 CDD:275380 8/22 (36%)
LRR_8 413..470 CDD:290566 20/61 (33%)
leucine-rich repeat 414..436 CDD:275380 6/21 (29%)
leucine-rich repeat 437..459 CDD:275380 10/26 (38%)
leucine-rich repeat 460..483 CDD:275380 9/22 (41%)
LRR_8 482..545 CDD:290566 20/64 (31%)
leucine-rich repeat 484..510 CDD:275380 9/27 (33%)
leucine-rich repeat 511..534 CDD:275380 8/22 (36%)
leucine-rich repeat 535..589 CDD:275380 11/54 (20%)
LRR_RI 588..891 CDD:238064 73/323 (23%)
LRR_8 588..650 CDD:290566 17/61 (28%)
leucine-rich repeat 590..613 CDD:275380 6/22 (27%)
leucine-rich repeat 614..639 CDD:275380 6/24 (25%)
LRR_8 638..698 CDD:290566 24/62 (39%)
leucine-rich repeat 640..663 CDD:275380 7/25 (28%)
leucine-rich repeat 664..687 CDD:275380 9/22 (41%)
LRR_8 688..749 CDD:290566 20/69 (29%)
leucine-rich repeat 688..711 CDD:275380 9/28 (32%)
leucine-rich repeat 712..735 CDD:275380 7/24 (29%)
leucine-rich repeat 740..783 CDD:275380 7/46 (15%)
LRR_8 784..843 CDD:290566 10/64 (16%)
leucine-rich repeat 785..808 CDD:275380 5/22 (23%)
leucine-rich repeat 809..832 CDD:275380 2/22 (9%)
LRR_RI <827..1053 CDD:238064 30/155 (19%)
LRR_8 832..890 CDD:290566 9/61 (15%)
leucine-rich repeat 833..856 CDD:275380 7/26 (27%)
leucine-rich repeat 857..879 CDD:275380 1/21 (5%)
leucine-rich repeat 880..900 CDD:275380 4/21 (19%)
LRR_8 904..963 CDD:290566 15/65 (23%)
leucine-rich repeat 905..928 CDD:275380 5/22 (23%)
leucine-rich repeat 929..952 CDD:275380 6/29 (21%)
leucine-rich repeat 953..977 CDD:275380 2/16 (13%)
leucine-rich repeat 978..1020 CDD:275380
LRR_8 1019..1074 CDD:290566
leucine-rich repeat 1045..1068 CDD:275380
leucine-rich repeat 1069..1090 CDD:275380
leucine-rich repeat 1091..1114 CDD:275380
leucine-rich repeat 1115..1161 CDD:275380
leucine-rich repeat 1162..1190 CDD:275380
Lrig2NP_001101180.1 LRR_RI <50..204 CDD:238064 44/155 (28%)
leucine-rich repeat 98..120 CDD:275380 4/30 (13%)
LRR_8 119..178 CDD:290566 20/59 (34%)
leucine-rich repeat 121..144 CDD:275380 8/23 (35%)
LRR_RI 136..398 CDD:238064 82/281 (29%)
leucine-rich repeat 145..167 CDD:275380 6/21 (29%)
LRR_8 167..226 CDD:290566 22/62 (35%)
leucine-rich repeat 168..192 CDD:275380 10/26 (38%)
leucine-rich repeat 193..215 CDD:275380 9/22 (41%)
leucine-rich repeat 216..239 CDD:275380 7/23 (30%)
LRR_8 239..298 CDD:290566 16/69 (23%)
leucine-rich repeat 240..263 CDD:275380 8/22 (36%)
leucine-rich repeat 264..287 CDD:275380 6/27 (22%)
leucine-rich repeat 288..311 CDD:275380 5/25 (20%)
LRR_8 311..370 CDD:290566 17/60 (28%)
leucine-rich repeat 312..335 CDD:275380 6/22 (27%)
leucine-rich repeat 336..359 CDD:275380 6/24 (25%)
LRR_8 358..421 CDD:290566 24/62 (39%)
leucine-rich repeat 360..384 CDD:275380 6/23 (26%)
LRR_4 385..426 CDD:289563 17/40 (43%)
leucine-rich repeat 387..410 CDD:275380 9/22 (41%)
leucine-rich repeat 411..433 CDD:275380 9/21 (43%)
LRRCT 444..492 CDD:214507 13/60 (22%)
Ig 501..597 CDD:299845 20/118 (17%)
IG 503..597 CDD:214652 19/116 (16%)
I-set 601..691 CDD:254352 19/82 (23%)
Ig_1 618..692 CDD:143240 13/65 (20%)
I-set 695..782 CDD:254352
Ig 713..782 CDD:299845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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