DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and Lrrc32

DIOPT Version :9

Sequence 1:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:XP_006229808.1 Gene:Lrrc32 / 293135 RGDID:1309087 Length:690 Species:Rattus norvegicus


Alignment Length:783 Identity:202/783 - (25%)
Similarity:309/783 - (39%) Gaps:193/783 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   608 FAQMRELSYINLSFNQLKTLPRGLFQSDAHSHL----VEIDLSYNGLERLEAQTFHSLGDLQTLN 668
            :::.|.:||..|....:.||  ||..|.....:    |..:...:||..|:..:..|| |:|.|.
  Rat    22 YSEGRAMSYQILILLAMLTL--GLAISQRRDQVPCRTVNKEALCHGLSLLQVPSVLSL-DIQALY 83

  Fly   669 LQSNRLRTIARHAFHNLEFLRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCS-LSLKSFLY 732
            |..|||::|..........||:||||.|.:..:..|.|..||.|..|:|.||:|.: ::|.|   
  Rat    84 LSGNRLQSILVSPLSFYTALRHLDLSDNEISFLQPGVFQALPYLEHLNLAHNRLAAGMALNS--- 145

  Fly   733 VSNTTTPLRLNVSHNHIASFYDELSSYMYIYQLDISHN--HVTKSDSFTNLANTLRFLNLAHNQL 795
                                 ..|.....:..||:|.|  |.:..:.....|..||.|:||.|.|
  Rat   146 ---------------------GGLGRLPLVVSLDLSGNSLHGSLVERLLGEAPRLRTLSLAENSL 189

  Fly   796 GSLQSHAFGDLEFLEILNVAHNNLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRIL 860
            ..|..|.|..:..:|.|::..|.|..:...:|:.|..|..|:||.|.|  ..:..|| |::|::|
  Rat   190 TRLARHTFWGMPAMEQLDLHSNVLMDIEDGAFEALPQLTHLNLSRNSL--TCISDFS-LQQLQVL 251

  Fly   861 RINSNRLRALPREVFMNT-------RLEFLDIAENQLSVWPVPAFTDIGFTLRSIQMS-HNNL-- 915
            .::.|.:     |.|...       :|.:||:.||:|..:|     |:....|.|.:: .|||  
  Rat   252 DLSCNSI-----ETFQTAPESQAQFQLAWLDLRENKLLHFP-----DLAMFPRLIYLNVSNNLIQ 306

  Fly   916 ----------------EYLDASMFIN----------SQFLYDISLARNRITILPDNTFSFLNNLT 954
                            |...||:..|          ||.| ::.|:.|.|.::|......|.:|.
  Rat   307 LPTGLPQDSEDLHAPSEGWSASLLSNPSRNASIHPLSQLL-NLDLSYNEIELVPAGFLEHLTSLR 370

  Fly   955 NLDLSQNPLVTTNLREVFVHTPRLRKLSLHH-------MGLYVLPPLKLPLLSYLDVSGNYLQEL 1012
            .|:||:|.|.:...|.. ...|.|..|.|.|       :|..||..||..||     ..|.|:||
  Rat   371 FLNLSRNCLRSFEARRA-GSLPCLVLLDLSHNVLEALELGTKVLGSLKTLLL-----QDNTLREL 429

  Fly  1013 SP--LGSLRHLRHVNVSHNKLTNASCAAEHLPPSVRVLDLAHNPLRRITLHDLASLRHLAELNIL 1075
            .|  ...|..|:.:|:..|:::.....||..||.  .:|.:..|    |||         .||:.
  Rat   430 PPYTFAGLASLQRLNLQGNQVSPCGGQAEPGPPG--CVDFSGIP----TLH---------FLNMA 479

  Fly  1076 DVKVTNPQAFSKLRS-LRKLHASSHANLGEIVARIPGLQQLRVHCLEPNIGQQLFAKLANNTKIR 1139
            ...:...:|.|.|.: |.:|..|::..|......:.||:                      ..:.
  Rat   480 GNSMETLRAGSFLHTPLTELDLSANPGLDVATGALVGLE----------------------ASLE 522

  Fly  1140 LLELYGSNVQTIAPDV--FTGLSRSQRLQVKISHTRISDLPPGIFYALREVPHLSIDISHNRINA 1202
            :|||.|:.:..:..|:  |..|.|     :.::..|:|.||........||    :|:.:|..:.
  Rat   523 VLELQGNGLVVLRVDLPCFRRLKR-----LNLAENRLSHLPAWTRAVSLEV----LDLRNNSFSL 578

  Fly  1203 LAADSFYPNKSYWDAVGTRSIMGGLITS-------HNPLECECGLVWFGHWLRRWLRESAQIKVI 1260
            |..::                ||||.||       .|||.| ||..|....|.:     .::.|.
  Rat   579 LPGNA----------------MGGLETSLRRLYLQGNPLSC-CGNGWLAAQLHQ-----GRVDVD 621

  Fly  1261 QKDDLKRMVQRARANTCHDPTSGRHLPILEIFPEDLLCQASALSSSGQRIFLLSFAMALLIPIVM 1325
            ...||          .|.. .|...:.:..:.|||  |:...|.:. ..|.:|||  .|:..||:
  Rat   622 ATQDL----------ICRF-GSQEEVSLSLVRPED--CEKGGLKNV-NLIIILSF--TLVSAIVL 670

  Fly  1326 TTM 1328
            ||:
  Rat   671 TTL 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
LRR_8 265..322 CDD:290566
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380
LRR_RI 315..546 CDD:238064
leucine-rich repeat 339..365 CDD:275380
LRR_8 365..424 CDD:290566
leucine-rich repeat 366..388 CDD:275380
leucine-rich repeat 389..412 CDD:275380
LRR_8 413..470 CDD:290566
leucine-rich repeat 414..436 CDD:275380
leucine-rich repeat 437..459 CDD:275380
leucine-rich repeat 460..483 CDD:275380
LRR_8 482..545 CDD:290566
leucine-rich repeat 484..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
leucine-rich repeat 535..589 CDD:275380
LRR_RI 588..891 CDD:238064 84/296 (28%)
LRR_8 588..650 CDD:290566 10/45 (22%)
leucine-rich repeat 590..613 CDD:275380 0/4 (0%)
leucine-rich repeat 614..639 CDD:275380 8/24 (33%)
LRR_8 638..698 CDD:290566 21/63 (33%)
leucine-rich repeat 640..663 CDD:275380 6/26 (23%)
leucine-rich repeat 664..687 CDD:275380 7/22 (32%)
LRR_8 688..749 CDD:290566 19/61 (31%)
leucine-rich repeat 688..711 CDD:275380 10/22 (45%)
leucine-rich repeat 712..735 CDD:275380 8/23 (35%)
leucine-rich repeat 740..783 CDD:275380 6/44 (14%)
LRR_8 784..843 CDD:290566 21/58 (36%)
leucine-rich repeat 785..808 CDD:275380 10/22 (45%)
leucine-rich repeat 809..832 CDD:275380 6/22 (27%)
LRR_RI <827..1053 CDD:238064 74/270 (27%)
LRR_8 832..890 CDD:290566 19/64 (30%)
leucine-rich repeat 833..856 CDD:275380 9/22 (41%)
leucine-rich repeat 857..879 CDD:275380 5/28 (18%)
leucine-rich repeat 880..900 CDD:275380 7/19 (37%)
LRR_8 904..963 CDD:290566 22/87 (25%)
leucine-rich repeat 905..928 CDD:275380 10/51 (20%)
leucine-rich repeat 929..952 CDD:275380 6/22 (27%)
leucine-rich repeat 953..977 CDD:275380 7/23 (30%)
leucine-rich repeat 978..1020 CDD:275380 17/50 (34%)
LRR_8 1019..1074 CDD:290566 13/54 (24%)
leucine-rich repeat 1045..1068 CDD:275380 5/22 (23%)
leucine-rich repeat 1069..1090 CDD:275380 5/20 (25%)
leucine-rich repeat 1091..1114 CDD:275380 6/22 (27%)
leucine-rich repeat 1115..1161 CDD:275380 7/47 (15%)
leucine-rich repeat 1162..1190 CDD:275380 6/27 (22%)
Lrrc32XP_006229808.1 LRR_8 80..137 CDD:290566 23/56 (41%)
LRR_RI 82..305 CDD:238064 74/259 (29%)
leucine-rich repeat 82..102 CDD:275380 6/19 (32%)
leucine-rich repeat 103..126 CDD:275380 10/22 (45%)
leucine-rich repeat 127..153 CDD:275380 9/49 (18%)
leucine-rich repeat 154..178 CDD:275380 6/23 (26%)
LRR_8 177..237 CDD:290566 21/59 (36%)
leucine-rich repeat 179..202 CDD:275380 10/22 (45%)
leucine-rich repeat 203..226 CDD:275380 6/22 (27%)
LRR_8 225..283 CDD:290566 19/65 (29%)
leucine-rich repeat 227..247 CDD:275380 9/22 (41%)
leucine-rich repeat 248..272 CDD:275380 5/28 (18%)
leucine-rich repeat 273..294 CDD:275380 8/25 (32%)
LRR_8 343..403 CDD:290566 20/61 (33%)
leucine-rich repeat 345..368 CDD:275380 6/23 (26%)
LRR_RI 389..605 CDD:238064 68/283 (24%)
LRR_8 393..450 CDD:290566 20/61 (33%)
leucine-rich repeat 393..415 CDD:275380 7/21 (33%)
leucine-rich repeat 416..439 CDD:275380 10/27 (37%)
leucine-rich repeat 440..472 CDD:275380 9/37 (24%)
leucine-rich repeat 473..494 CDD:275380 7/29 (24%)
leucine-rich repeat 496..520 CDD:275380 6/45 (13%)
leucine-rich repeat 521..543 CDD:275380 6/21 (29%)
LRR_8 542..601 CDD:290566 18/83 (22%)
leucine-rich repeat 544..565 CDD:275380 6/25 (24%)
leucine-rich repeat 566..587 CDD:275380 7/40 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45617
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.