DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and lron-5

DIOPT Version :10

Sequence 1:NP_609740.4 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_497943.2 Gene:lron-5 / 184307 WormBaseID:WBGene00008656 Length:656 Species:Caenorhabditis elegans


Alignment Length:698 Identity:154/698 - (22%)
Similarity:244/698 - (34%) Gaps:219/698 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   422 NRLTTVPVALSSLHHLKYLYLTSNQISQLNNLPS-----FTENLRVLSLS--------GNNFSMI 473
            ||.:.:...:|.|..::.|:|.|      .|||.     |..|||||.:|        |:.|  :
 Worm    36 NRPSLLIRTVSMLPTIRQLHLNS------LNLPQPPHFLFHPNLRVLRMSRCGMHEIPGSTF--L 92

  Fly   474 PVLGLKNYTQLSYLNMGYNSITDIPEGIFAVDSWGSNLQTILLRNNKITHLH-----LGSFAGLE 533
            |:.||:      .:::..|.:..:|..:.....:   |:.::|.||::::|.     |.....||
 Worm    93 PLPGLE------VIDLSNNHLETLPPTVLRSLKF---LRVLILSNNRLSNLDQLTWILAPGVVLE 148

  Fly   534 QIQEISLSFNDITIHHPLVFENVSRTLKILELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNN 598
            |   :.||.|.|.|                ..|..|||              |:.||.   |.:.
 Worm   149 Q---LDLSGNPIAI----------------ATSMTVFP--------------PVRQLF---LSDT 177

  Fly   599 NLKQVSNESFAQMRELSYINLSFNQLKTLPRGLFQSDAHSHLVEIDLSYNGLERLEAQTFHSLGD 663
            .::.|:..:.              ..|.|| |....|...|:                ..|:|  
 Worm   178 RMESVNETAI--------------MFKKLP-GKCDRDVCRHI----------------PIHNL-- 209

  Fly   664 LQTLNLQSNRLRTIARHAFHNLEFLRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCSLSLK 728
                                |:..:..:|.|.||.:.|..||..|..|...:||           
 Worm   210 --------------------NVSIITTIDFSSNRDLEIDSGALDVFSNATYVDL----------- 243

  Fly   729 SFLYVSNTTTPL-------------RLNVSHNHIASFYDELSSY-MYIYQLDISH---------- 769
                 |||..|:             .||:||..:....|..::. .:::.||||.          
 Worm   244 -----SNTRLPVGFEEWLERKSRVKSLNISHCQLPLHEDTWTACGQFLHSLDISGIGAKRLRFSR 303

  Fly   770 ----NHVTKSDSFTNL----ANTLRFLNLAHNQLGSLQSHAFG-DLEFLEILNVAHNNLTSLRRR 825
                ..|...|:..:.    |.::..|:|..|..........| :|..|..|.::||.:|||...
 Worm   304 FCPIRSVFARDNLISSVYIDAVSMESLHLERNMFSEFPIPPPGVELTELHTLGLSHNLMTSLPPH 368

  Fly   826 SFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRINSNRLRALPREVFMNTRLEFLDIAENQL 890
            :.|...:||..|:|.|||.::..:.|.::                      ...|..||::.|||
 Worm   369 ALQSYPNLQHFDVSSNQLSEIDPQAFPSI----------------------GLGLISLDLSSNQL 411

  Fly   891 SVWPVPAFTDIGFTLRSIQMSHNNLEYLDASMFINSQFLYDISLAR---------NRITILPDNT 946
            |..|.|...    :|..:.:|.|.:.:||...|.....|..:.:|.         ||.:....:.
 Worm   412 SSLPHPILP----SLLLLDLSFNTISHLDPHFFTGLPMLQQLRIASNPTLFSRCPNRDSPCWSDH 472

  Fly   947 FSFLNNLTNLDLSQNPLVTTNLREVFVHTPRLRKLS---LHHMGLYVLPPLKLP-LLSYLDVSGN 1007
            ...|.:|.:||:|.:.|      |..:|...||.|.   |....:.::....|| .|..||:..|
 Worm   473 LDELTSLVDLDISNSGL------EFSLHWRHLRTLKSLILRGNEIRIIDSKSLPENLRTLDLGEN 531

  Fly  1008 YLQELSPLGSLRHLRHVNVSHNKLTNASCAAEHLPPSVRVLDLAHNPL 1055
            .:|..|....|.|||.:.|..|.| ...|:...:.|.:.......:||
 Worm   532 RVQFTSNFSKLEHLRDLRVDQNPL-RCDCSLYDIVPHLLNQSQISDPL 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_609740.4 PRK15370 <69..>353 CDD:185268
leucine-rich repeat 99..118 CDD:275380
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380
LRR <338..651 CDD:443914 53/246 (22%)
leucine-rich repeat 339..365 CDD:275380
leucine-rich repeat 366..388 CDD:275380
leucine-rich repeat 389..412 CDD:275380
leucine-rich repeat 414..436 CDD:275380 4/13 (31%)
leucine-rich repeat 437..459 CDD:275380 7/26 (27%)
leucine-rich repeat 460..483 CDD:275380 10/30 (33%)
leucine-rich repeat 484..510 CDD:275380 2/25 (8%)
leucine-rich repeat 511..534 CDD:275380 7/27 (26%)
leucine-rich repeat 535..589 CDD:275380 10/53 (19%)
LRR 543..971 CDD:443914 94/469 (20%)
leucine-rich repeat 590..613 CDD:275380 3/22 (14%)
leucine-rich repeat 614..639 CDD:275380 5/24 (21%)
leucine-rich repeat 640..663 CDD:275380 2/22 (9%)
leucine-rich repeat 664..687 CDD:275380 1/22 (5%)
leucine-rich repeat 688..711 CDD:275380 8/22 (36%)
leucine-rich repeat 712..735 CDD:275380 2/22 (9%)
leucine-rich repeat 740..783 CDD:275380 11/74 (15%)
leucine-rich repeat 785..808 CDD:275380 5/23 (22%)
leucine-rich repeat 809..832 CDD:275380 8/22 (36%)
leucine-rich repeat 833..856 CDD:275380 8/22 (36%)
leucine-rich repeat 857..879 CDD:275380 0/21 (0%)
leucine-rich repeat 880..900 CDD:275380 9/19 (47%)
leucine-rich repeat 905..928 CDD:275380 6/22 (27%)
LRR 911..>1203 CDD:443914 40/158 (25%)
leucine-rich repeat 929..952 CDD:275380 5/31 (16%)
leucine-rich repeat 953..977 CDD:275380 7/23 (30%)
leucine-rich repeat 978..1020 CDD:275380 13/45 (29%)
leucine-rich repeat 1045..1068 CDD:275380 2/11 (18%)
leucine-rich repeat 1069..1090 CDD:275380
leucine-rich repeat 1091..1114 CDD:275380
leucine-rich repeat 1115..1161 CDD:275380
leucine-rich repeat 1162..1190 CDD:275380
PCC 1230..>1298 CDD:188093
lron-5NP_497943.2 LRR <48..>186 CDD:443914 44/190 (23%)
leucine-rich repeat 51..72 CDD:275380 7/26 (27%)
leucine-rich repeat 73..96 CDD:275380 8/24 (33%)
leucine-rich repeat 97..120 CDD:275380 3/28 (11%)
leucine-rich repeat 121..146 CDD:275380 6/24 (25%)
leucine-rich repeat 147..168 CDD:275380 12/53 (23%)
leucine-rich repeat 169..208 CDD:275380 10/72 (14%)
leucine-rich repeat 209..237 CDD:275380 10/49 (20%)
leucine-rich repeat 238..284 CDD:275380 11/61 (18%)
leucine-rich repeat 327..351 CDD:275380 5/23 (22%)
LRR <348..>555 CDD:443914 62/238 (26%)
leucine-rich repeat 352..375 CDD:275380 8/22 (36%)
leucine-rich repeat 376..391 CDD:275380 7/14 (50%)
leucine-rich repeat 401..445 CDD:275380 15/47 (32%)
leucine-rich repeat 446..478 CDD:275380 5/31 (16%)
leucine-rich repeat 479..500 CDD:275380 8/26 (31%)
leucine-rich repeat 501..522 CDD:275380 4/20 (20%)
leucine-rich repeat 523..544 CDD:275380 7/20 (35%)
LRRCT 553..601 CDD:214507 6/27 (22%)
Blue background indicates that the domain is not in the aligned region.

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