DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and pan-1

DIOPT Version :9

Sequence 1:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_497925.1 Gene:pan-1 / 175596 WormBaseID:WBGene00003915 Length:594 Species:Caenorhabditis elegans


Alignment Length:600 Identity:132/600 - (22%)
Similarity:226/600 - (37%) Gaps:193/600 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   605 NESFAQMR--ELSYINLSFNQLKTLPRGLFQSDAHSHLVEIDLSYNGLERLEAQTFHSL-GDLQT 666
            :|:.|.:.  ||..:.:..:.:..||:.||:   :....::.|...||..|:..:|.|| |..:.
 Worm    70 SENLASLNGTELGRLTIRDSTVNVLPQDLFE---NVFAKQVKLERCGLSTLQPNSFQSLGGSAEL 131

  Fly   667 LNLQSNRLRTIARHAFHNLEFLRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCSLSLKSFL 731
            |:|:.||::.:.:..|..|:.|:.|||:.|::..|..|||..|..:..|.|..|.:         
 Worm   132 LSLRENRIKKLEKGLFTGLKSLKTLDLAMNKIQEIDVGAFEELKKVEELLLNENDI--------- 187

  Fly   732 YVSNTTTPLRLNVSHNHIASFYDELSSYMYIYQLDISHNHVTKSDSFTNLANTLRFLNLAHNQLG 796
                                                   .|.|:.:|..:.|             
 Worm   188 ---------------------------------------RVLKTGTFDGMKN------------- 200

  Fly   797 SLQSHAFGDLEFLEILNVAHNNLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILR 861
                        |:.|.:.:.||..:::.:|:|||||::|.||:|.|:.:....||.|:.||:|.
 Worm   201 ------------LKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENIDWTIFSALKNLRVLD 253

  Fly   862 INSNRLRALPREVFMNTRLEFLDIAENQLSVWPVPAFTDIGFTLRSIQM-----------SHNNL 915
            :.||::..:..:.|  .:||.|.:..|.:.            :::||::           ..|.:
 Worm   254 LGSNKISNVEMKSF--PKLEKLVLNNNTID------------SMKSIKLKDLPSLVVALFDRNKI 304

  Fly   916 EYL-DASMF--INSQFLYDISLARNRITILPDNTFSFLNNLTNLDLSQNPLVTTNLREVFVHTPR 977
            |.: |..||  ..|..:..:|||||.::.:....|....||..|.|..|     .:.|:..|:| 
 Worm   305 ESIGDMDMFGLTRSDRIETLSLARNNLSQISPKAFQHTPNLITLLLQYN-----QIEELSSHSP- 363

  Fly   978 LRKLSLHHMGLYVLPPLKLPLLSYLDVSGNYLQELSPLGSLRHLRHVNVSHNKLTNASCAAEHLP 1042
                          ..::.|.|:                ||:.|..:.:|.|.|  :...::.||
 Worm   364 --------------SQVRTPFLA----------------SLKKLVTLQLSSNNL--SVIRSDELP 396

  Fly  1043 PSVRVLDLAHNPLRRITLHDLASLR------HLAELNIL----------------DVKV------ 1079
            .|:..|.|.||.:.:|....|..:.      |..:||.|                ||.:      
 Worm   397 KSLSSLALDHNVISKIEARALEGMEIKRLYLHSNKLNYLYQGTFDSFSPKSVEAVDVSLNPWVCV 461

  Fly  1080 -TNPQAFSKLRSLRKLHASSHANLGEIVARIPGLQQLRVHCLE-PNIGQQLFAKLANNTKIRLLE 1142
             .:|:.:..    |.|.||..|::.|..          :.||. ||.||    |..:.......|
 Worm   462 CNDPKEWLP----RWLEASEEADVAEGA----------LGCLAIPNCGQ----KEGSTVMPEEEE 508

  Fly  1143 LYGSNVQTIAPDVFT 1157
            :|.|...|:|..:.|
 Worm   509 VYRSGWITVAATILT 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
LRR_8 265..322 CDD:290566
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380
LRR_RI 315..546 CDD:238064
leucine-rich repeat 339..365 CDD:275380
LRR_8 365..424 CDD:290566
leucine-rich repeat 366..388 CDD:275380
leucine-rich repeat 389..412 CDD:275380
LRR_8 413..470 CDD:290566
leucine-rich repeat 414..436 CDD:275380
leucine-rich repeat 437..459 CDD:275380
leucine-rich repeat 460..483 CDD:275380
LRR_8 482..545 CDD:290566
leucine-rich repeat 484..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
leucine-rich repeat 535..589 CDD:275380
LRR_RI 588..891 CDD:238064 67/288 (23%)
LRR_8 588..650 CDD:290566 9/46 (20%)
leucine-rich repeat 590..613 CDD:275380 2/9 (22%)
leucine-rich repeat 614..639 CDD:275380 5/24 (21%)
LRR_8 638..698 CDD:290566 19/60 (32%)
leucine-rich repeat 640..663 CDD:275380 7/23 (30%)
leucine-rich repeat 664..687 CDD:275380 6/22 (27%)
LRR_8 688..749 CDD:290566 13/60 (22%)
leucine-rich repeat 688..711 CDD:275380 10/22 (45%)
leucine-rich repeat 712..735 CDD:275380 3/22 (14%)
leucine-rich repeat 740..783 CDD:275380 3/42 (7%)
LRR_8 784..843 CDD:290566 14/58 (24%)
leucine-rich repeat 785..808 CDD:275380 0/22 (0%)
leucine-rich repeat 809..832 CDD:275380 7/22 (32%)
LRR_RI <827..1053 CDD:238064 59/239 (25%)
LRR_8 832..890 CDD:290566 20/57 (35%)
leucine-rich repeat 833..856 CDD:275380 9/22 (41%)
leucine-rich repeat 857..879 CDD:275380 6/21 (29%)
leucine-rich repeat 880..900 CDD:275380 4/19 (21%)
LRR_8 904..963 CDD:290566 19/72 (26%)
leucine-rich repeat 905..928 CDD:275380 8/36 (22%)
leucine-rich repeat 929..952 CDD:275380 6/22 (27%)
leucine-rich repeat 953..977 CDD:275380 6/23 (26%)
leucine-rich repeat 978..1020 CDD:275380 4/41 (10%)
LRR_8 1019..1074 CDD:290566 15/60 (25%)
leucine-rich repeat 1045..1068 CDD:275380 6/28 (21%)
leucine-rich repeat 1069..1090 CDD:275380 6/43 (14%)
leucine-rich repeat 1091..1114 CDD:275380 6/22 (27%)
leucine-rich repeat 1115..1161 CDD:275380 12/43 (28%)
leucine-rich repeat 1162..1190 CDD:275380
pan-1NP_497925.1 leucine-rich repeat 130..152 CDD:275380 6/21 (29%)
LRR_8 132..187 CDD:290566 19/54 (35%)
leucine-rich repeat 153..176 CDD:275380 10/22 (45%)
leucine-rich repeat 177..200 CDD:275380 6/70 (9%)
LRR_8 199..259 CDD:290566 24/84 (29%)
leucine-rich repeat 201..224 CDD:275380 7/22 (32%)
LRR_RI 224..434 CDD:238064 61/261 (23%)
leucine-rich repeat 225..248 CDD:275380 9/22 (41%)
leucine-rich repeat 249..269 CDD:275380 6/21 (29%)
LRR_8 268..355 CDD:290566 23/103 (22%)
leucine-rich repeat 270..293 CDD:275380 6/34 (18%)
leucine-rich repeat 294..320 CDD:275380 6/25 (24%)
LRR_8 320..387 CDD:290566 21/102 (21%)
leucine-rich repeat 321..344 CDD:275380 6/22 (27%)
LRR_8 375..432 CDD:290566 14/58 (24%)
leucine-rich repeat 377..398 CDD:275380 6/22 (27%)
leucine-rich repeat 399..420 CDD:275380 6/20 (30%)
leucine-rich repeat 423..442 CDD:275380 4/18 (22%)
LRR_RI 80..326 CDD:238064 73/335 (22%)
leucine-rich repeat 81..104 CDD:275380 5/25 (20%)
leucine-rich repeat 105..128 CDD:275380 7/22 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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