DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and lrig1

DIOPT Version :9

Sequence 1:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:XP_002938412.1 Gene:lrig1 / 100491453 XenbaseID:XB-GENE-494193 Length:1043 Species:Xenopus tropicalis


Alignment Length:850 Identity:201/850 - (23%)
Similarity:325/850 - (38%) Gaps:220/850 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 LPRSLVTMDLSSNLLTVFPQQLFEQLPELRIVSLRDNLIRSVQ---WKELQVRPLRMHLERLDLG 345
            ||...|.::||||.|.......|.||||||.|.|..|.:..:.   ....||..|.:|       
 Frog    53 LPAWTVHLNLSSNKLKEIDPAAFAQLPELREVHLGHNELTGIPHLGTAAPQVTTLSLH------- 110

  Fly   346 QNCIENLESDYFQQNYSDVHLRALNLEQNFVTQLPEAVFKA-TGIAHLVLAFNAISRVHPSAFEG 409
            .|.|.:::....:..   |.|..|:|..|.:|::....|.| ..|..|.|..|.||.:.|.:|:.
 Frog   111 HNKIRSIDPSQLKPY---VALETLDLSSNELTEIRSGSFPAGLRIKELHLGSNKISSLEPGSFDS 172

  Fly   410 LTETLEYLDLERNRLTTVPVALSSLHHLKYLYLTSNQISQLNNLPSF--TENLRVLSLSGNNFSM 472
            |:.:|..|.|.:||::.:||.:..|..|..|.|..|:|..:..| :|  .|:|.||.|..||.| 
 Frog   173 LSRSLLTLRLSKNRISQLPVKVFRLPRLTQLELNRNRIRLIEGL-TFQGLESLEVLKLQRNNIS- 235

  Fly   473 IPVLGLKNYTQLSYLNMGYNSITDIPEGIFAVDSWG-SNLQTILLRNNKITHLHLGSFAGLEQIQ 536
                                .:||   |.|    || |.:|.:.|.||.:|.::.||..||..:|
 Frog   236 --------------------KLTD---GAF----WGLSRMQILHLENNSLTEVNSGSLYGLLSLQ 273

  Fly   537 EISLSFNDITIHHPLVFENVSRTLKILELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLK 601
            ::.||.|.|:            |:.....||.                ..|.:|:   |.:|||.
 Frog   274 QLHLSHNSIS------------TISSAGWSFC----------------QKLQELV---LSHNNLT 307

  Fly   602 QVSNESFAQMRELSYINLSFNQLKTLPRGLFQSDAHSHLVEIDLSYNGLERLEAQT---FHSLGD 663
            ::...|.|.:..|..:.||:|.:..:..|.|:......::|:|  :|.:......|   |..|..
 Frog   308 RLDEGSLADLGVLDVLRLSYNSISHIAEGAFKGLKSLRILELD--HNEISGTIEDTNGAFIGLES 370

  Fly   664 LQTLNLQSNRLRTIARHAFHNLEFLRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQ-LCSLSL 727
            |..|.|..|:::::|:.||..:|.|.:|:|..|.|.::...||..:.||..|.:..:. ||...|
 Frog   371 LNKLTLFGNKIKSVAKRAFSGIESLEHLNLGENALRSVHSEAFGEMKNLKELVVGSSSFLCDCHL 435

  Fly   728 K---SFLYVSNTTTPLRLNVSH----NHIASF--------YDELSSYMYIYQLDISHNHVTKSDS 777
            |   .:|......|.::.:.:|    |:.:.|        .|:|.......|.:.:...:.|:..
 Frog   436 KWLPQWLTSRRLQTKVKASCAHPGSLNNTSIFSVPPRSFVCDDLPKPQIRVQPETTMAVLGKAIR 500

  Fly   778 FTNLA-----NTLRFL-----NLAHNQLGSLQSHAFG---DLEFLEILNVAH-NNLTSLRRRSFQ 828
            ||..|     :.:.|.     .:.||  ..:::.|.|   :.|..|...:.| .|||......:|
 Frog   501 FTCSAASSSPSPMTFAWKKDNEILHN--AEVENFASGTEREGEVTEYTTILHLRNLTFAHEGRYQ 563

  Fly   829 GLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRINSNRLRALPRE--VFMNTRLEFLDIAENQLS 891
            .:.: .:...|::...:|.|....:..|             .||:  :...||......|:..  
 Frog   564 CIIT-NDFGPSYSSKARLTVNVLPSFIK-------------TPRDSTIRAGTRARLECAADGH-- 612

  Fly   892 VWPVP--AFTDIGFTLRSIQMSHNNLEYLDASMFINSQFLYDISLAR-NRITILPDNTFSFLNNL 953
              |.|  |:...|.|                          |...|| .|:.::||:...|:.::
 Frog   613 --PTPEIAWQKDGGT--------------------------DFPAARERRMHVMPDDDVFFIMDV 649

  Fly   954 TNLDL------SQN----------------PLVTTNLREVFVHT---------------PRLRKL 981
            ...|:      :||                |.:...|.:..|.|               ||:..|
 Frog   650 KIEDMGVYSCTAQNSAGSVSANATLTVLEMPFLVHPLEDRVVSTGATLALQCKASGSPPPRITWL 714

  Fly   982 ---------SLHHMGLYVLPPLKLPLLSYL--DVSGNYLQELS-PLGSLRHLRHVNVSHNKLTNA 1034
                     ..||    ..|..:|.::..:  :.:|.|..|:| .||:.|...||:::    :.|
 Frog   715 KGDEPLVMTERHH----YTPGNQLLIIRQVMSEDAGKYTCEMSNTLGTERAYSHVSIA----STA 771

  Fly  1035 SCAAE 1039
            .|..|
 Frog   772 GCQGE 776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064 23/68 (34%)
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
LRR_8 265..322 CDD:290566 18/37 (49%)
leucine-rich repeat 266..287 CDD:275380 2/2 (100%)
leucine-rich repeat 288..311 CDD:275380 9/22 (41%)
leucine-rich repeat 312..338 CDD:275380 8/28 (29%)
LRR_RI 315..546 CDD:238064 69/237 (29%)
leucine-rich repeat 339..365 CDD:275380 2/25 (8%)
LRR_8 365..424 CDD:290566 20/59 (34%)
leucine-rich repeat 366..388 CDD:275380 7/22 (32%)
leucine-rich repeat 389..412 CDD:275380 9/22 (41%)
LRR_8 413..470 CDD:290566 21/58 (36%)
leucine-rich repeat 414..436 CDD:275380 8/21 (38%)
leucine-rich repeat 437..459 CDD:275380 7/23 (30%)
leucine-rich repeat 460..483 CDD:275380 7/22 (32%)
LRR_8 482..545 CDD:290566 20/63 (32%)
leucine-rich repeat 484..510 CDD:275380 6/26 (23%)
leucine-rich repeat 511..534 CDD:275380 9/22 (41%)
leucine-rich repeat 535..589 CDD:275380 9/53 (17%)
LRR_RI 588..891 CDD:238064 74/337 (22%)
LRR_8 588..650 CDD:290566 16/61 (26%)
leucine-rich repeat 590..613 CDD:275380 7/22 (32%)
leucine-rich repeat 614..639 CDD:275380 6/24 (25%)
LRR_8 638..698 CDD:290566 18/62 (29%)
leucine-rich repeat 640..663 CDD:275380 6/25 (24%)
leucine-rich repeat 664..687 CDD:275380 7/22 (32%)
LRR_8 688..749 CDD:290566 18/68 (26%)
leucine-rich repeat 688..711 CDD:275380 7/22 (32%)
leucine-rich repeat 712..735 CDD:275380 7/26 (27%)
leucine-rich repeat 740..783 CDD:275380 10/59 (17%)
LRR_8 784..843 CDD:290566 13/67 (19%)
leucine-rich repeat 785..808 CDD:275380 5/30 (17%)
leucine-rich repeat 809..832 CDD:275380 6/23 (26%)
LRR_RI <827..1053 CDD:238064 47/266 (18%)
LRR_8 832..890 CDD:290566 9/59 (15%)
leucine-rich repeat 833..856 CDD:275380 3/22 (14%)
leucine-rich repeat 857..879 CDD:275380 2/23 (9%)
leucine-rich repeat 880..900 CDD:275380 4/21 (19%)
LRR_8 904..963 CDD:290566 11/81 (14%)
leucine-rich repeat 905..928 CDD:275380 0/22 (0%)
leucine-rich repeat 929..952 CDD:275380 7/23 (30%)
leucine-rich repeat 953..977 CDD:275380 7/60 (12%)
leucine-rich repeat 978..1020 CDD:275380 11/53 (21%)
LRR_8 1019..1074 CDD:290566 5/20 (25%)
leucine-rich repeat 1045..1068 CDD:275380
leucine-rich repeat 1069..1090 CDD:275380
leucine-rich repeat 1091..1114 CDD:275380
leucine-rich repeat 1115..1161 CDD:275380
leucine-rich repeat 1162..1190 CDD:275380
lrig1XP_002938412.1 LRRNT 28..59 CDD:214470 2/5 (40%)
leucine-rich repeat 57..80 CDD:275378 9/22 (41%)
PLN00113 <58..>370 CDD:215061 106/383 (28%)
leucine-rich repeat 104..127 CDD:275380 5/32 (16%)
leucine-rich repeat 128..151 CDD:275380 7/22 (32%)
leucine-rich repeat 152..199 CDD:275380 17/46 (37%)
leucine-rich repeat 200..223 CDD:275380 7/23 (30%)
leucine-rich repeat 224..247 CDD:275380 13/50 (26%)
leucine-rich repeat 248..295 CDD:275380 17/74 (23%)
leucine-rich repeat 272..292 CDD:275380 6/31 (19%)
leucine-rich repeat 296..319 CDD:275380 8/25 (32%)
leucine-rich repeat 320..343 CDD:275380 6/22 (27%)
LRR_8 343..405 CDD:338972 18/63 (29%)
leucine-rich repeat 344..370 CDD:275380 6/27 (22%)
leucine-rich repeat 371..394 CDD:275380 7/22 (32%)
leucine-rich repeat 395..413 CDD:275380 5/17 (29%)
LRRCT 429..477 CDD:214507 9/47 (19%)
leucine-rich repeat 445..471 CDD:275380 4/25 (16%)
IG 488..582 CDD:214652 18/96 (19%)
Ig_1 603..677 CDD:143240 16/103 (16%)
I-set 680..759 CDD:369462 17/82 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.