DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stc and nfx1

DIOPT Version :9

Sequence 1:NP_476599.1 Gene:stc / 34888 FlyBaseID:FBgn0001978 Length:1106 Species:Drosophila melanogaster
Sequence 2:XP_690559.4 Gene:nfx1 / 562071 ZFINID:ZDB-GENE-160728-101 Length:1083 Species:Danio rerio


Alignment Length:1069 Identity:397/1069 - (37%)
Similarity:548/1069 - (51%) Gaps:145/1069 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 SKLQASAPEFVPNFAKLSLEETPAAATTNGNSTASLETAINETRP-------------------- 211
            |||...:.||||. |||:   .|.:..:...|....:...|..||                    
Zfish    10 SKLNPESAEFVPK-AKLN---QPDSRRSYRQSNHYQDWRANHVRPHHHLRQSNAANHGGNEFENP 70

  Fly   212 --RTLRAQEPAERGA----------NNQCSNHNYERERERER------DRDRDRERDRDRDRDRD 258
              ..|.:.|||.||.          .....|.:.:|..:.:|      ||..||......:|..|
Zfish    71 TDNALPSPEPAFRGGLRGRGRGGRPRGGRGNGDTDRRLQSQRWIKPVSDRGHDRPNTPTSNRSTD 135

  Fly   259 RDRD---------RDRDRDSR---PGNTRQQR------RSDYRDDREDRYERSDRR------RPQ 299
            .:..         |:..||:|   |...|.:|      ..|..::.|::....|.:      .|:
Zfish   136 EENKERATFEVDVREPYRDNRWKKPNKARAERLMKEPMSRDQEENLENQAAGKDTKPVAVYEHPE 200

  Fly   300 KQQRYDNHRS----------NKRR----------DDWNR------NRDRINGFPRAVDDLDTSNE 338
            .:||  ||:.          |.||          .:|..      ..|...|.....:..:.:|.
Zfish   201 PEQR--NHKGWRGGEHRMQPNFRRKGPGPSHGIEGNWREREPVQMKEDERRGAEEEGERPEEANR 263

  Fly   339 SAHPSPEKQSQLQQISPRRG-------PPL----PPADNEKLSQREKLVRDIEQRRLECLVCVEA 392
            :......||..||...|:||       .|:    ||...|  :|...|:..:.:.:.||:||.|.
Zfish   264 NRRGMRGKQPPLQNPGPKRGGGPERRTGPVKRIEPPKSKE--TQTGCLIEQLTEEKYECMVCCEV 326

  Fly   393 IKSHQPTWSCRNCYHMLHLKCTITWASSSKSEV------GWRCPACQNVLQDLPRDYLCFCGKLK 451
            |:...|.|||::|:|:.||.|...||.|..|:.      ||||||||:|....|..|.|||||:.
Zfish   327 IRVMAPVWSCQSCFHVFHLNCIKKWARSPASQADGDSSEGWRCPACQHVALKAPNSYTCFCGKVS 391

  Fly   452 NPPVSRTELAHSCGEVCCRIEG---CSHACTLLCHPGPCPPCQANVVRSCGCGRSTKTMQCAMKE 513
            ||...|||:.||||::|.:...   |:|.|.:||||||||.|.|.:.:||.||:.:|.::|:...
Zfish   392 NPEFQRTEIPHSCGDMCGKKRSGGECNHPCNILCHPGPCPQCPAFITKSCVCGKMSKQVRCSQTG 456

  Fly   514 EVLCGEICDKLLNCGEHRCQAECHSGKCAACSEQVVQQCHCGKQERKVPCTRESQ--DKRTY-SC 575
            .:||.|:|..||||.:|.|...||||.|..|..:|.|.|.||...|:|.|..:|:  |...| ||
Zfish   457 PLLCEEVCGTLLNCSQHSCAQVCHSGPCQPCQLRVQQVCFCGVVFREVACGTDSKKFDGSGYFSC 521

  Fly   576 KDSCGQPLPCGHHKCKDSCHAGSCRPCKLSPEQITSCPCGKMPVPA------GQRSSCLDPIPTC 634
            ...||:.|.|..|:|:.|||.|.|:||.|||:.:.||.||:.|:..      .:|.:|.||||:|
Zfish   522 CKPCGKMLDCQSHRCQQSCHPGECQPCPLSPKLVRSCSCGQTPLSKLLDLGYPERKACTDPIPSC 586

  Fly   635 EGICSRTLRCGKPAHPHQCGSKCHLGQCPPCPKQTGVKCRCGHMDQMIKCRQLCNRADDA-RCKR 698
            ...|::.|.||.....|.|...||...|.||...:.:|||||...:.:.|..:....|.. .|::
Zfish   587 GKTCNKPLPCGDADSVHLCEKLCHEDSCGPCSLTSSIKCRCGSNTKEVPCAAIQTEEDMVFTCEK 651

  Fly   699 RCTKKRSCGKHKCNVECCIDIDHDCPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECG 763
            ||||||.||:|||...||:|::|.|.:.|...||||.|:|...||||||.||:::||:||.|.||
Zfish   652 RCTKKRLCGRHKCGELCCVDMEHKCSMICGYKLSCGLHRCQDLCHRGNCQPCWQTSFDELTCYCG 716

  Fly   764 AEVIYPPVPCGTKKPICKLPCSRIHPCDHPPQHNCHSGPTCPPCMIFTTKLCHGNHELRKTIPCS 828
            ..|::||:||||:.|.||..|:|.|.||||..|:||:...||||...|.|.|.||||.|..|||.
Zfish   717 ETVLFPPIPCGTRPPECKNVCTRDHDCDHPVFHSCHNEEKCPPCTYLTKKWCMGNHEQRSNIPCH 781

  Fly   829 QPNFSCGMACGKPLPCGGHKCIKPCHEGPCQSAGEICRQSCTKPRPTCGHKCAAACHEGA-CPET 892
            ..:.|||:.|.|.||||.|:|.:.||.|.||:.|| |:|.||.|||.|||.|.|.||.|. |..|
Zfish   782 LQDISCGLVCEKLLPCGSHRCKRICHRGECQAEGE-CKQPCTHPRPGCGHPCGAPCHPGTPCIPT 845

  Fly   893 PCKELVEVQCECGNRKQNRSCQELAREHSRIATIQLASSMAEMSRGNYMELSEILAPAKKSNK-- 955
            .|...|.:||:||.:|:...|.:.|..:.|.|.|.:||.:::|..|..:::.::   .||..|  
Zfish   846 VCSAKVALQCDCGRKKETVPCADAASSYQRYAAISVASKLSDMQLGESVDIGQL---TKKEQKKA 907

  Fly   956 TLDCNDECRLLERNRRLAAALSSGNS-DTKQKCLTKYSEFVRGFAKKNPALTKSVYETLTDLVKL 1019
            .|:|:.||..||||||||.||....| |..:...:||::.::..|:|:......:.|.:.:||:|
Zfish   908 RLECDQECATLERNRRLAEALQIDPSVDPFKSTSSKYTDSLKEDARKDFKFVSEIEEEIRNLVEL 972

  Fly  1020 AKESKQRSRSHSFPTMNREKRQLVHELCEVFGIESVSYDKEPNRNVVATAHKDRCWFPATSIMEV 1084
            |.:.||..|||.||.|.|:.|:::|||.||:|:||||||.||.||||.||.:.:...|.||:..:
Zfish   973 ANKGKQPKRSHCFPPMKRDHRRIIHELAEVYGVESVSYDNEPKRNVVITAIRGKSACPNTSLAAL 1037

  Fly  1085 LARESGQRRVP-----------VPSNNAW 1102
            ::|||..|..|           ..:.|:|
Zfish  1038 ISRESFTRAPPPIAHIKQHNSKTDNGNSW 1066

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stcNP_476599.1 NF-X1-zinc-finger 464..510 CDD:100116 21/48 (44%)
NF-X1-zinc-finger 517..565 CDD:100116 23/47 (49%)
NF-X1-zinc-finger 575..617 CDD:100116 21/41 (51%)
NF-X1-zinc-finger 634..686 CDD:100116 18/51 (35%)
NF-X1-zinc-finger 723..775 CDD:100116 28/51 (55%)
NF-X1-zinc-finger 834..882 CDD:100116 28/47 (60%)
NF-X1-zinc-finger 865..915 CDD:100116 25/50 (50%)
R3H_NF-X1 996..1069 CDD:100072 35/72 (49%)
nfx1XP_690559.4 NF-X1-zinc-finger 404..454 CDD:100116 22/49 (45%)
NF-X1-zinc-finger 460..508 CDD:100116 23/47 (49%)
NF-X1-zinc-finger 521..563 CDD:100116 21/41 (51%)
NF-X1-zinc-finger 586..638 CDD:100116 18/51 (35%)
NF-X1-zinc-finger 676..728 CDD:100116 28/51 (55%)
NF-X1-zinc-finger 787..834 CDD:100116 28/47 (60%)
R3H_NF-X1 949..1022 CDD:100072 35/72 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592547
Domainoid 1 1.000 122 1.000 Domainoid score I5617
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1875
Inparanoid 1 1.050 742 1.000 Inparanoid score I571
OMA 1 1.010 - - QHG52859
OrthoDB 1 1.010 - - D299100at2759
OrthoFinder 1 1.000 - - FOG0004250
OrthoInspector 1 1.000 - - oto38795
orthoMCL 1 0.900 - - OOG6_103027
Panther 1 1.100 - - LDO PTHR12360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2986
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.910

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