DRSC/TRiP Functional Genomics Resources

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Protein Alignment stc and Nfxl1

DIOPT Version :9

Sequence 1:NP_476599.1 Gene:stc / 34888 FlyBaseID:FBgn0001978 Length:1106 Species:Drosophila melanogaster
Sequence 2:NP_001163909.1 Gene:Nfxl1 / 289595 RGDID:1359201 Length:919 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stcNP_476599.1 NF-X1-zinc-finger 464..510 CDD:100116
NF-X1-zinc-finger 517..565 CDD:100116
NF-X1-zinc-finger 575..617 CDD:100116
NF-X1-zinc-finger 634..686 CDD:100116
NF-X1-zinc-finger 723..775 CDD:100116
NF-X1-zinc-finger 834..882 CDD:100116
NF-X1-zinc-finger 865..915 CDD:100116
R3H_NF-X1 996..1069 CDD:100072
Nfxl1NP_001163909.1 RING-CH-C4HC3_NFXL1 166..228 CDD:319611
NF-X1-zinc-finger 316..364 CDD:100116
NF-X1-zinc-finger 369..417 CDD:100116
NF-X1-zinc-finger 422..470 CDD:100116
NF-X1-zinc-finger 501..549 CDD:100116
NF-X1-zinc-finger 709..756 CDD:100116
NF-X1-zinc-finger 773..819 CDD:100116
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D299100at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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