DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stc and SPCC18.03

DIOPT Version :9

Sequence 1:NP_476599.1 Gene:stc / 34888 FlyBaseID:FBgn0001978 Length:1106 Species:Drosophila melanogaster
Sequence 2:NP_588382.1 Gene:SPCC18.03 / 2538928 PomBaseID:SPCC18.03 Length:1077 Species:Schizosaccharomyces pombe


Alignment Length:998 Identity:312/998 - (31%)
Similarity:439/998 - (43%) Gaps:209/998 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 SVNPSN-SNFSSFYTPFGNNPFDFSASKLQ--------ASAPEFVPNFAKLSLEETPAAATTNGN 197
            |::||: |...:|.|....|..:...|..:        ||||.|||. :.:.|.    .:..||:
pombe    31 SISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPT-SSVQLN----VSKNNGH 90

  Fly   198 STASLETAINETRPRTLRAQEPAERGANNQCSNHNYERERERERDRDRDRERDRDRDRDRDRDRD 262
            ..:.:..|::                            .::.|..:....|..|.::|.|.....
pombe    91 KASDIVDAVS----------------------------SKDEELRKHAKGEGKRSKNRKRSSKHS 127

  Fly   263 RDRDRDSRPGNTRQQRRSDYRDDREDRYERSDRRRPQKQQRYDNHRSNKRRDDWNRNRDRINGFP 327
            ..:..|.:..|:.|:..|    .:.....:|:|.|..|.:...|.:..|:               
pombe   128 EKQAVDLKSSNSSQETSS----SKGSVNNKSERSREAKSRMPKNSKEIKK--------------- 173

  Fly   328 RAVDDLDTSNESAHPSPEKQSQLQQISPRRGPPLPPADNEKLSQREKLVRDIEQRRLECLVCVEA 392
                .||.|                               ||....:::.:::.|..||.||.:.
pombe   174 ----GLDLS-------------------------------KLDMTSRMIVELKNRLYECSVCTDT 203

  Fly   393 IKSHQPTWSCRNCYHMLHLKCTITWASSS---KSEVGWRCPACQNVLQDLPRDYLCFCGKLKNPP 454
            |......|||..|||:.||.|...|..:|   ::|..||||.||:...:....|||:|||.:.|.
pombe   204 INPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQSNQTETSLHYLCWCGKQEKPE 268

  Fly   455 VSRTELAHSCGEVCCRIEG--CSHACTLLCHPGPCPPCQANVVRSCGCGRSTKTMQCA-----MK 512
            ..:..:.||||:.|.:..|  |.|.|.|||||||||||.|.|.:.|.||:.:...:|:     ..
pombe   269 FVKNLVPHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHARCSNISKVNT 333

  Fly   513 EEVLCGEICDKLLNCGEHRCQAECHSGKCAACSEQVVQQCHCGKQERKVPCTR------ESQDKR 571
            |...|..:||:||.||||.|:..||||.|.||.|.:..:|:||...:..||:.      ..:|:.
pombe   334 EPFRCENVCDELLPCGEHTCKKRCHSGLCGACFEPINAKCYCGLHSKTYPCSSLPSPSISKKDEN 398

  Fly   572 --------TYSCKDSCGQPLPCGHHKCKDSCH--AGSCRPCKLSPEQITSCPCGKMPV----PAG 622
                    .|||.:.|.....||.|||..:||  :.:...|..:.:.:|.|||||..:    ...
pombe   399 GSVKEWFGYYSCNNPCTLFFDCGLHKCSKTCHPISETRAHCPFATDVLTKCPCGKEDISFLLKGH 463

  Fly   623 QRSSCLDPIPTCEGICSRTLRCGKPAHPHQCGSKCHLGQCPPCPKQTGVKCRCGHMDQMIKCRQL 687
            :|.||.|||||||.||.:.|.||     |:|..|||||.|..|.:...:.|||...:..:.|.||
pombe   464 ERKSCSDPIPTCENICGKLLSCG-----HRCKYKCHLGSCGTCSETLTIPCRCTANEVQVTCEQL 523

  Fly   688 CNRADDARCKRRCTKKRSCGKHKCNVECC---------------------------IDIDHDCPL 725
            .| .....|:|.||...|||:|:||.:||                           .:.:|.|..
pombe   524 QN-GFIPTCERLCTILLSCGRHQCNKKCCSGYSKAQTRLARRPKGAKLRYHLLTEEFEEEHICFR 587

  Fly   726 PCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPICKLPCSRIHPC 790
            |||:.||||.|.|...||||.||.|..:|||||.|.||...:||||.|||..|.|...|.....|
pombe   588 PCNKKLSCGNHFCQHMCHRGPCPRCLEASFEELPCTCGRTRLYPPVACGTPIPDCPYLCVLPKSC 652

  Fly   791 DHPP-QHNCHSGPT---CPPCMIFTTKLCHGNHELRKTIPCSQPNFSCGMACGKPLPCGGHKCIK 851
            .||. :||||  ||   ||||..|..|.|.....:.:..||.:.|..||..|.|.|.|..|.|.|
pombe   653 HHPQVKHNCH--PTSEPCPPCPYFVKKRCLCGKHILENQPCYRENVRCGELCNKLLSCKTHFCEK 715

  Fly   852 PCH-EGPCQSAGEICRQSCTKPRPTCGHKCAAACHEG-ACPE-TPCKELVEVQCECGNRKQNRSC 913
            .|| :|.|:|:   |::.|.|.|..|.|.|.:.||.| .|.| .|||..:||.||||..::..:|
pombe   716 LCHPDGECESS---CKKECGKRRMYCEHVCQSPCHAGHPCDERIPCKAPLEVSCECGRIRKKVTC 777

  Fly   914 QELAREHSRIATIQLASSMAEMSRGNYMELSEILAPAKKSNKTLDCNDECRLLERNRRLAAALSS 978
                                :.|..|       ..|..|.:.||:|:.:    :||:..|.||:.
pombe   778 --------------------DASYDN-------PDPQHKVSCTLECSQQ----QRNKLFAEALNI 811

  Fly   979 GNSDTKQKCLTKYSEFVRGFAKKNPALTKSVYETLTDLVKLAKESKQRSRSHSFPTMNREKRQLV 1043
             .:|.:...:.:|::.:..|..|:......|...|.:.|      ..::.|..||:|.||:|..|
pombe   812 -KTDRRSNDVAQYTKSLLVFYGKHSDFADEVESLLRNFV------NNKASSFRFPSMRREQRAFV 869

  Fly  1044 HELCEVFGIESVSYDKEPNRNVV 1066
            |...::.|:||||:|.||.|||:
pombe   870 HMFAKLLGLESVSFDPEPKRNVM 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stcNP_476599.1 NF-X1-zinc-finger 464..510 CDD:100116 23/47 (49%)
NF-X1-zinc-finger 517..565 CDD:100116 23/47 (49%)
NF-X1-zinc-finger 575..617 CDD:100116 15/43 (35%)
NF-X1-zinc-finger 634..686 CDD:100116 20/51 (39%)
NF-X1-zinc-finger 723..775 CDD:100116 30/51 (59%)
NF-X1-zinc-finger 834..882 CDD:100116 21/48 (44%)
NF-X1-zinc-finger 865..915 CDD:100116 22/51 (43%)
R3H_NF-X1 996..1069 CDD:100072 25/71 (35%)
SPCC18.03NP_588382.1 NF-X1-zinc-finger 278..326 CDD:100116 23/47 (49%)
NF-X1-zinc-finger 338..386 CDD:100116 23/47 (49%)
NF-X1-zinc-finger 475..520 CDD:100116 19/49 (39%)
NF-X1-zinc-finger 585..637 CDD:100116 30/51 (59%)
NF-X1-zinc-finger 698..742 CDD:100116 20/46 (43%)
NF-X1-zinc-finger 727..777 CDD:100116 21/49 (43%)
R3H_unknown_2 838..895 CDD:100076 23/61 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 1.000 Domainoid score I2301
eggNOG 1 0.900 - - E1_KOG1952
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1875
Inparanoid 1 1.050 515 1.000 Inparanoid score I227
OMA 1 1.010 - - QHG52859
OrthoFinder 1 1.000 - - FOG0004250
OrthoInspector 1 1.000 - - oto101335
orthoMCL 1 0.900 - - OOG6_103027
Panther 1 1.100 - - LDO PTHR12360
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R432
SonicParanoid 1 1.000 - - X2986
TreeFam 1 0.960 - -
1413.860

Return to query results.
Submit another query.