DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15269 and prdm14

DIOPT Version :9

Sequence 1:NP_609739.2 Gene:CG15269 / 34887 FlyBaseID:FBgn0028878 Length:587 Species:Drosophila melanogaster
Sequence 2:XP_005162704.1 Gene:prdm14 / 563151 ZFINID:ZDB-GENE-030131-2709 Length:568 Species:Danio rerio


Alignment Length:626 Identity:147/626 - (23%)
Similarity:229/626 - (36%) Gaps:163/626 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SYDLSPSPARTSPTNGVQNLGAGAQLPPAQVTD--------FSISKILGKERKSAQDTSTNILDL 61
            |..||..||...     ::|.....||.|...|        |...|.||:....||    .|:..
Zfish     2 SVSLSSHPAVRD-----RSLAVYPSLPGAHYADVLKSAHSIFHPLKSLGRMVTDAQ----TIMPF 57

  Fly    62 SKSSSNSIRSPQALGGLAIPSTPYASGAYSMLPPDLVAMANATKFYAQFFPHLLPAYAAAAAAAG 126
            :.|.                :||:.|...::....::.::|     ..:|.|:.|:.:...|   
Zfish    58 NFSG----------------ATPFFSHNSAIFHEQILNVSN-----IPYFQHIQPSQSVYNA--- 98

  Fly   127 LSTPPTSPYQTHQHQQHLPNQQKRFFAPYVINGSVPPPPPLQ------QQQQPL---IRTKSTAC 182
                        :|:.........|.:|..:..|.....|::      |...|.   .||.|  .
Zfish    99 ------------RHEDQSTGSLSDFSSPSSVKSSSALSSPVKDNFSCPQAAHPTPEHARTYS--F 149

  Fly   183 TRPDCPECLDYYQRLQTGGYKQTAPLISPAASSVSSSTGSIRPVRDLIMSATGGAASTNISLTTV 247
            |..|....|..|.:.|.   :.....||..:...|::...|.||     ...|......||:...
Zfish   150 TEEDLFTVLYGYSKKQG---QNAGHAISGLSFPPSTADRQILPV-----DIEGFELPEGISILQT 206

  Fly   248 TNLSLNSVQATA-VGMMPKMT------GGLITTAV----------------GSNSGAIGGIGGYN 289
            |..||:...|.| ...:||.|      |.|:.|:.                |..|..:.|.|...
Zfish   207 TCGSLSHYGAFADKSTIPKGTRFGPFQGKLVNTSEIKTYDDNTLMWEIFENGRLSHFVDGRGAPG 271

  Fly   290 --------ATSAEE---ISYKC------RICEKV---------FG-C-----------------S 310
                    |...||   |:.:|      ..|:::         :| |                 |
Zfish   272 NWMSLVKCARFPEEQNLIAVQCDGQIYYEACKEIRAGQELLVWYGDCYVQFLGIPLTLKEFIDDS 336

  Fly   311 ETLQAHEKTHKSPRYECADCGKGFSQLRNYKYHLSVH--------RGTKEFAAECPECGKTFNDK 367
            |.|.|.:   ....::|..|||.|:    |||:...|        :|.::|  .|..|.::|..:
Zfish   337 EALPAED---SGEGFKCDRCGKVFA----YKYYRDKHLKYTRCVDQGDRKF--PCHLCNRSFEKR 392

  Fly   368 GYLSSH-LKIHRNRKEYECPYCPKSFNQRVAFNMHVRIHTGVKPHKCNECGKRFSRKMLLKQHMR 431
            ..|..| |.:|...:.::|..|.|||:|..:.|.|:|:|:|.:|:||..|.|.|:...:|:.|:|
Zfish   393 DRLRIHILHVHEKHRPHKCSVCGKSFSQSSSLNKHMRVHSGERPYKCVYCNKAFTASSILRTHIR 457

  Fly   432 THSGEKPYQCSVCGKSFADRSNMTLH-HRLHSGIKPFSCPLCPKAFTKKHHLKTHLNYHTGCKPY 495
            .||||:|::|..|||:||..:....| .|.|:..|..||.:|...|.:...||.|:..|.. :|.
Zfish   458 QHSGERPFKCKHCGKAFASHAAHDSHVRRTHAKDKQLSCDVCGATFQEAQELKYHMKAHKK-RPL 521

  Fly   496 ----VCPHPNCNQAFTQSSNMRTHAKKCQYRPLDGLTVTSS 532
                |.|..:.|..|:...::....:........|:|..||
Zfish   522 LESSVVPPADENALFSTKESLHAQTQLADTFSFPGMTSISS 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15269NP_609739.2 C2H2 Zn finger 300..320 CDD:275368 8/52 (15%)
COG5048 <316..502 CDD:227381 64/199 (32%)
C2H2 Zn finger 327..347 CDD:275368 8/19 (42%)
zf-C2H2 356..377 CDD:278523 6/21 (29%)
C2H2 Zn finger 357..377 CDD:275368 6/20 (30%)
zf-H2C2_2 369..394 CDD:290200 9/25 (36%)
C2H2 Zn finger 385..405 CDD:275368 9/19 (47%)
zf-H2C2_2 397..422 CDD:290200 11/24 (46%)
C2H2 Zn finger 413..433 CDD:275368 7/19 (37%)
zf-H2C2_2 426..449 CDD:290200 12/22 (55%)
zf-C2H2 439..461 CDD:278523 8/22 (36%)
C2H2 Zn finger 441..461 CDD:275368 8/20 (40%)
zf-C2H2 467..489 CDD:278523 7/21 (33%)
C2H2 Zn finger 469..489 CDD:275368 6/19 (32%)
C2H2 Zn finger 497..515 CDD:275368 3/17 (18%)
prdm14XP_005162704.1 SET 214..316 CDD:279228 18/101 (18%)
C2H2 Zn finger 382..401 CDD:275368 5/18 (28%)
zf-C2H2 409..431 CDD:278523 9/21 (43%)
C2H2 Zn finger 411..431 CDD:275368 9/19 (47%)
zf-H2C2_2 423..447 CDD:290200 10/23 (43%)
C2H2 Zn finger 439..459 CDD:275368 7/19 (37%)
zf-H2C2_2 452..476 CDD:290200 13/23 (57%)
C2H2 Zn finger 467..488 CDD:275368 8/20 (40%)
C2H2 Zn finger 496..516 CDD:275368 6/19 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.