DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15269 and Zkscan3

DIOPT Version :9

Sequence 1:NP_609739.2 Gene:CG15269 / 34887 FlyBaseID:FBgn0028878 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_001012053.2 Gene:Zkscan3 / 306977 RGDID:1305753 Length:553 Species:Rattus norvegicus


Alignment Length:399 Identity:115/399 - (28%)
Similarity:171/399 - (42%) Gaps:85/399 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 TRPDCPECLDYYQRLQTGGYKQTAPLISPAASSVSSSTGSIRPVRDLIMSATGGAASTNISLT-- 245
            |.|..|:..|..:.|.:     .|.|::.|..|.||...|:.|   |:...:.|:..:.:.:|  
  Rat   136 TPPQVPDDDDGQELLCS-----KAVLLTSAQGSESSQMESMEP---LLKQESLGSLPSEVRVTQA 192

  Fly   246 --------TVTNLS-----LNSVQATAVGMMPKMTG------GLITTAVGSNSGAIGGIGGYNAT 291
                    |.|.|:     |..::..|.|:.|:.|.      .|....:..|||::..:.     
  Rat   193 GHCGEDGVTATRLTSELQGLLKMEDVAPGLSPRWTEQDSSQMNLYKDEMQENSGSLVSLD----- 252

  Fly   292 SAEEISYKCRICEKVFGCSETLQAHEKTHKSPRYECADCGKGFSQL--------RNYKYHLSVHR 348
              |.:..|.|         :...|.|.|.:.|.......|:...|:        :..|...:...
  Rat   253 --ENMQTKVR---------DLPPAEENTEQKPEQTVCFLGEDTVQIPTGTEASEQEGKLQTTQKN 306

  Fly   349 GTKEFAAECPECGKTFNDKGYLSSHLKIHRNRKEYECPYCPKSFNQRVAFNMHVRIHTGVKPHKC 413
            .|......|.||||:|.....||.|.:||...|.|||..|.|:|....|..:|.|:|||.||::|
  Rat   307 ATGNRRFYCRECGKSFAQSSGLSKHKRIHTGLKPYECEECGKAFIGSSALIIHQRVHTGEKPYEC 371

  Fly   414 NECGKRFSRKMLLKQHMRTHSGEKPYQCSVCGKSFADRSNMTLHHRLHSGIKPFSCPLCPKAFTK 478
            .||||.||....|.:|.|||:|||||:|..|||:|....::..|||:|:|.||:.|.:|||||.:
  Rat   372 EECGKAFSHSSDLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHRIHTGEKPYQCNMCPKAFRR 436

  Fly   479 KHHLKTHLNYHTGCKPYVCPHP------------------------NCNQAFTQSSNMRTHAK-- 517
            ..||..|...|||.|.:..|.|                        :|.::|::.:::..|.|  
  Rat   437 SSHLLRHQRTHTGDKDFFVPEPYWESQSRVESHWENIETPVSYQCNDCERSFSRITSLIEHQKVH 501

  Fly   518 ------KCQ 520
                  :||
  Rat   502 TGEKPFECQ 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15269NP_609739.2 C2H2 Zn finger 300..320 CDD:275368 3/19 (16%)
COG5048 <316..502 CDD:227381 77/217 (35%)
C2H2 Zn finger 327..347 CDD:275368 3/27 (11%)
zf-C2H2 356..377 CDD:278523 9/20 (45%)
C2H2 Zn finger 357..377 CDD:275368 9/19 (47%)
zf-H2C2_2 369..394 CDD:290200 12/24 (50%)
C2H2 Zn finger 385..405 CDD:275368 7/19 (37%)
zf-H2C2_2 397..422 CDD:290200 14/24 (58%)
C2H2 Zn finger 413..433 CDD:275368 10/19 (53%)
zf-H2C2_2 426..449 CDD:290200 14/22 (64%)
zf-C2H2 439..461 CDD:278523 9/21 (43%)
C2H2 Zn finger 441..461 CDD:275368 8/19 (42%)
zf-C2H2 467..489 CDD:278523 9/21 (43%)
C2H2 Zn finger 469..489 CDD:275368 9/19 (47%)
C2H2 Zn finger 497..515 CDD:275368 4/41 (10%)
Zkscan3NP_001012053.2 SCAN 47..159 CDD:128708 7/27 (26%)
KRAB_A-box 213..271 CDD:413388 14/73 (19%)
zf-C2H2 313..335 CDD:395048 9/21 (43%)
C2H2 Zn finger 315..335 CDD:275368 9/19 (47%)
zf-H2C2_2 328..350 CDD:404364 11/21 (52%)
zf-C2H2 341..363 CDD:395048 9/21 (43%)
C2H2 Zn finger 343..363 CDD:275368 7/19 (37%)
COG5048 <367..514 CDD:227381 52/144 (36%)
C2H2 Zn finger 371..391 CDD:275368 10/19 (53%)
C2H2 Zn finger 399..419 CDD:275368 8/19 (42%)
C2H2 Zn finger 427..447 CDD:275368 9/19 (47%)
C2H2 Zn finger 481..501 CDD:275368 4/19 (21%)
zf-C2H2 507..529 CDD:395048 2/4 (50%)
C2H2 Zn finger 509..529 CDD:275368 2/2 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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