DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15269 and prdm6

DIOPT Version :9

Sequence 1:NP_609739.2 Gene:CG15269 / 34887 FlyBaseID:FBgn0028878 Length:587 Species:Drosophila melanogaster
Sequence 2:XP_002931772.5 Gene:prdm6 / 100494529 XenbaseID:XB-GENE-854907 Length:541 Species:Xenopus tropicalis


Alignment Length:519 Identity:120/519 - (23%)
Similarity:194/519 - (37%) Gaps:133/519 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 LSKSSSNSIRSPQALGGLA-IPSTPYASGAYSMLPP--DLVAMANATK----------------F 106
            ||.:||::..:|.:|.|:. |||......:...:.|  :.:.::..|:                .
 Frog    60 LSSASSSNSSTPSSLAGVTPIPSVLGVLPSTEAVAPQRNELGISKCTEETLERLQCSPEELDYYL 124

  Fly   107 YAQFFPHLLPAYAAAAAAAGLSTPPTSPYQTHQHQQHLPNQQKRFFAPYVINGSVPPPPPLQQQQ 171
            |.|....::|          ||||.:.|  .::......|:          ||..|...||...:
 Frog   125 YGQQRMEIIP----------LSTPTSDP--NNRCDMCADNR----------NGECPMHGPLHSLR 167

  Fly   172 QPLIRTKSTACTR--PDCPE-----------C------LDY----YQRLQTGGYKQTAPLISPAA 213
            : |:.|.|||...  |:.||           |      |.|    .||:|.|.:  ..|......
 Frog   168 R-LVGTSSTAAVAPPPEIPEWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTW--IGPFQGVLV 229

  Fly   214 SSVSSSTGSIRPVRDL----IMSAT------GGAASTNISLTTV--------TNLSL----NSVQ 256
            |......|.:|..:.|    ....|      ||..|.:..:..|        .||::    :::.
 Frog   230 SPEKVQNGGVRNTQHLWEIYDQDGTLQHFIDGGEPSKSSWMRYVRCARHCGEQNLTVVQYRSNIF 294

  Fly   257 ATAVGMMPKMTGGLITTAVGSNSGAIGGIGGYNATSAEEISYKCRICEKVFGCSETLQAHEKTHK 321
            ..|...:|:.|..|:.  ...:..:..||........|.::....:.| .....:|||:..|..|
 Frog   295 YRACIDIPRGTELLVW--YNDSYTSFFGIPLQCIAQDENLNVPSPVIE-AMSRQDTLQSFNKNGK 356

  Fly   322 -------SPRYECADCGKGFSQLR------------NYKYH--LSVHRGTKEFAAECPECGKTFN 365
                   |..:....|.:.:|.|.            |.|..  |:....|.:..:|       |:
 Frog   357 LSSSLQRSLVFPQTPCNRNYSLLEKSGPLDTGYNQINVKNQRVLASPTSTSQLNSE-------FS 414

  Fly   366 DKGYLSSHLKIHRNRKEYECPYCPKSFNQRVAFNMHVRIHTGVKPHKCNECGKRFSRKMLLKQHM 430
            |     .||        ::|..|.|:|.||:...|||......:|::|..|.:.||:...|:.|:
 Frog   415 D-----WHL--------WKCGQCFKTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHV 466

  Fly   431 RTHSGEKPYQCSVCGKSFADRSNMTLHHRLHSGIKPFSCPLCPKAFTKKHHLKTHLNYHTGCKP 494
            .|||.::|::|..||::||..:.:..|.|.|:|.|||.|..|.::||:...|..|......|||
 Frog   467 VTHSSDRPFKCGYCGRAFAGATTLNNHIRTHTGEKPFKCERCDRSFTQATQLSRHQRMPNECKP 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15269NP_609739.2 C2H2 Zn finger 300..320 CDD:275368 5/19 (26%)
COG5048 <316..502 CDD:227381 56/200 (28%)
C2H2 Zn finger 327..347 CDD:275368 6/33 (18%)
zf-C2H2 356..377 CDD:278523 5/20 (25%)
C2H2 Zn finger 357..377 CDD:275368 4/19 (21%)
zf-H2C2_2 369..394 CDD:290200 6/24 (25%)
C2H2 Zn finger 385..405 CDD:275368 9/19 (47%)
zf-H2C2_2 397..422 CDD:290200 7/24 (29%)
C2H2 Zn finger 413..433 CDD:275368 6/19 (32%)
zf-H2C2_2 426..449 CDD:290200 9/22 (41%)
zf-C2H2 439..461 CDD:278523 7/21 (33%)
C2H2 Zn finger 441..461 CDD:275368 7/19 (37%)
zf-C2H2 467..489 CDD:278523 7/21 (33%)
C2H2 Zn finger 469..489 CDD:275368 6/19 (32%)
C2H2 Zn finger 497..515 CDD:275368
prdm6XP_002931772.5 PR-SET_PRDM6 191..319 CDD:380968 23/131 (18%)
COG5048 <348..530 CDD:227381 56/201 (28%)
C2H2 Zn finger 421..441 CDD:275368 9/19 (47%)
C2H2 Zn finger 449..469 CDD:275368 6/19 (32%)
zf-C2H2 475..497 CDD:395048 7/21 (33%)
C2H2 Zn finger 477..497 CDD:275368 7/19 (37%)
zf-H2C2_2 490..514 CDD:404364 10/23 (43%)
C2H2 Zn finger 505..523 CDD:275368 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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