DRSC/TRiP Functional Genomics Resources

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Protein Alignment vig and AT5G47210

DIOPT Version :9

Sequence 1:NP_523572.1 Gene:vig / 34885 FlyBaseID:FBgn0024183 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_199532.1 Gene:AT5G47210 / 834767 AraportID:AT5G47210 Length:357 Species:Arabidopsis thaliana


Alignment Length:522 Identity:125/522 - (23%)
Similarity:178/522 - (34%) Gaps:203/522 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 AGKNRYELLFMDDDVSDPLDNLVAPTAAAAAAAAGKKKQPSAAAAAATKTTANKVANSNNKANAG 68
            |..|.::||  .||..||....||.:.....|||.  .||..||...||..              
plant     2 ASLNPFDLL--GDDAEDPSQLAVALSQKVEKAAAA--VQPPKAAKFPTKPA-------------- 48

  Fly    69 SNIGGPNAKKPNQAEKENKPNNALNKTDGKKFTPSADNKQQQFNNNASSNYKQQGAPRQGGGANR 133
                     .|:||.:|::                                   .||:.|.|...
plant    49 ---------PPSQAVRESR-----------------------------------NAPQGGRGGTG 69

  Fly   134 TREFGSGQGQGQGQGGQQQRSVNFRQQNGNAETREQRNN-----RRNVRENVGAPDGQQSRPYRG 193
            .|   .|..:|:|.||       :.:.|.|.:.....|.     ||...:..||..|.....||.
plant    70 GR---GGFSRGRGNGG-------YNRDNRNNDAPGNENGFSGGYRRPSEDADGASRGGSVGGYRV 124

  Fly   194 PGG--GPGAGGDRPQRQNRNYDGQNRKREFDRQSGSDRTGVKSIDKRDGAGSHNWGSVKEAIDDV 256
            .||  ||..||   .....:.|.:...|.:||.|   |||..:..||:|.|..|||:.:   ||:
plant   125 GGGREGPRRGG---VANGESGDVERPPRNYDRHS---RTGHGTGMKRNGGGRGNWGTTE---DDI 180

  Fly   257 NKNESETNVTNAEGGAKADESGTEPQNEQA----TAEE---------EAKELTLDEW-------- 300
            ... ||...|..|....|::.|.|.:..:|    ||||         ||:|:||:|:        
plant   181 PPT-SEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEEAEAREMTLEEYEKILEEKK 244

  Fly   301 KAQQGQRIKPTFNIRKAGEGEDTTQWKKMVVLTSNKKKENDSEEELEYDPALYPQRVGRQQRVLD 365
            ||.|..:::.    ||.    ||..::.|..| ||||   :::||:..                 
plant   245 KALQATKVEE----RKV----DTKVFESMQQL-SNKK---NTDEEIFI----------------- 280

  Fly   366 IQFNFNDGRRGGPGGFGGRGGRGGPRPGGFGGGPRSEGGNRDGGNREGGRDNREGGNRG------ 424
                                                    :.|.::|..:|..|...:.      
plant   281 ----------------------------------------KLGSDKEKRKDATEKAKKSLSINEF 305

  Fly   425 --PRDGQQHNNEGGGSSAQNQRPPIDRRGPGNNQNNNQNSGPGPNKRFERQQNTAPKVNDERQFP 487
              |.||:::|..||||           ||.|.....    |.|.|:|:.::. .||.:.|..|||
plant   306 LKPADGKRYNGRGGGS-----------RGRGGRGGR----GEGGNQRYAKEA-AAPAIGDTAQFP 354

  Fly   488 TL 489
            :|
plant   355 SL 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vigNP_523572.1 HABP4_PAI-RBP1 217..319 CDD:282609 39/122 (32%)
AT5G47210NP_199532.1 Stm1_N 1..61 CDD:401511 23/120 (19%)
HABP4_PAI-RBP1 147..257 CDD:398441 38/120 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 52 1.000 Domainoid score I4255
eggNOG 1 0.900 - - E1_KOG2945
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 101 1.000 Inparanoid score I2167
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12299
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
55.010

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