DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vig and serbp1

DIOPT Version :9

Sequence 1:NP_523572.1 Gene:vig / 34885 FlyBaseID:FBgn0024183 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_001001227.1 Gene:serbp1 / 407908 XenbaseID:XB-GENE-494265 Length:406 Species:Xenopus tropicalis


Alignment Length:431 Identity:143/431 - (33%)
Similarity:186/431 - (43%) Gaps:82/431 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 NRYELLFMDDDVSDPLDNLVAPTAAAAAAAAGKKKQPSAAAAAATKTTANKVANSNNKANAGSNI 71
            ||::.||  ||.|||.:.|        .||..|||:.:......|..||.:.|....|       
 Frog    15 NRFDQLF--DDESDPFEVL--------KAAENKKKEGAGGPGQGTGKTAAQAAKQPKK------- 62

  Fly    72 GGPNAKKPNQAEKENKPNNALNKTDGKKFTPSADNKQQQFNNNASSNYKQQGAPRQGGGANRTRE 136
                     :::|:.|  |.|::.:.|...| ...|::..........:||..|:|    ..|::
 Frog    63 ---------ESQKDRK--NPLSEKEEKSQAP-VPIKKEAIRRVGRRPDQQQQPPQQ----PPTQQ 111

  Fly   137 FGSGQGQGQGQGGQQQRSVNFRQQNGNAETREQRNNRRNVRE----------------NVGAPDG 185
                |.|.|.|..|||:.....|..|....|.| ::||..||                :|..|  
 Frog   112 ----QQQQQQQQQQQQQPPQSSQGEGKPVDRRQ-SDRRPPRERRFEKPTEEKGEAGEFSVDRP-- 169

  Fly   186 QQSRPYRGPGGGPGAGGDRPQR-----QNRNYDGQNRKREFDRQSGSDR-----TGVKSIDKRDG 240
            ...||.|| .||||..|.|..|     :...:|.:. ||||||.|||||     :|.|..|||.|
 Frog   170 IVDRPIRG-RGGPGGRGGRGGRGRGLGRGDGFDSRG-KREFDRHSGSDRASSHFSGPKHEDKRGG 232

  Fly   241 AGSHNWGSVKEAIDDVNKNESETNVTNAEGGAKADESGTEPQNEQATAEEEAKELTLDEWKAQQG 305
            :||||||:||:.:.:::::.........|.....|....|.:.|: ..||..||:|||||||.|.
 Frog   233 SGSHNWGTVKDELSELDQSAVTEETPETEEHPAVDSENKENEAEE-VKEEGPKEMTLDEWKAMQD 296

  Fly   306 -QRIKPTFNIRKAGEGEDTTQWKKMVVLTSNKKKENDSEEELEYDPALYPQRVGRQQRVLDIQFN 369
             :|.|..|||||..||.| .||||..||    .|....|...|.|...:..|.........::.|
 Frog   297 KERSKVEFNIRKPNEGAD-GQWKKGFVL----HKAKSDEVHAESDALDHHFRKPANDITSQLEIN 356

  Fly   370 FNDGRRGGPGGFGGRGGRGGPRPGGFGGGPRSEGGNRDGGN 410
            |.|..|.|.||.||||||.       .||..|.||..|..|
 Frog   357 FGDLGRPGRGGRGGRGGRA-------RGGRPSRGGRTDKSN 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vigNP_523572.1 HABP4_PAI-RBP1 217..319 CDD:282609 48/107 (45%)
serbp1NP_001001227.1 IHABP4_N 5..>98 CDD:374411 27/111 (24%)
HABP4_PAI-RBP1 204..311 CDD:368109 48/108 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 87 1.000 Domainoid score I7859
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 148 1.000 Inparanoid score I4292
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002116
OrthoInspector 1 1.000 - - otm47925
Panther 1 1.100 - - O PTHR12299
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5307
SonicParanoid 1 1.000 - - X1570
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.180

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