DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vig and SERBP1

DIOPT Version :9

Sequence 1:NP_523572.1 Gene:vig / 34885 FlyBaseID:FBgn0024183 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_001018077.1 Gene:SERBP1 / 26135 HGNCID:17860 Length:408 Species:Homo sapiens


Alignment Length:519 Identity:156/519 - (30%)
Similarity:212/519 - (40%) Gaps:160/519 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 NRYELLFMDDDVSDPLDNLVAPTAAAAAAAAGKKKQPSAAAAA--ATKTTANKVANSNNKANAGS 69
            ||::.||  ||.|||.:.|        .||..|||:.......  ..|:.|...|.:|      |
Human    15 NRFDQLF--DDESDPFEVL--------KAAENKKKEAGGGGVGGPGAKSAAQAAAQTN------S 63

  Fly    70 NIGGPNAKKPNQAEKENKPNNALNKTDGKKFT--PSADNKQQQFNNNASSNYKQQGAPRQGGGAN 132
            |..|...:|.:|.:::|....::...|.|:.|  |.|              .|::|..|.|...:
Human    64 NAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVA--------------LKKEGIRRVGRRPD 114

  Fly   133 RTREFGSGQGQGQGQGGQQQRSVNFRQQNGNAETREQRNNRRNVRENVGAPDGQQS-------RP 190
            :         |.||:|    :.::.|.:  ....||:|..:....:..|   |:.|       ||
Human   115 Q---------QLQGEG----KIIDRRPE--RRPPRERRFEKPLEEKGEG---GEFSVDRPIIDRP 161

  Fly   191 YRGPGG-GPGAGG-DRPQRQNRNYDGQNRKREFDRQSGSDR------TGVKSIDKRDGAGSHNWG 247
            .||.|| |.|.|| .|...:...:|.:. ||||||.|||||      :|:|..|||.|:||||||
Human   162 IRGRGGLGRGRGGRGRGMGRGDGFDSRG-KREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWG 225

  Fly   248 SVKEAIDD--------VNKNES---ETNVT--NAEGGAKADESGTE-PQNE-QATAEEEAKELTL 297
            :||:.:.:        ::.|.|   ::|||  ..||......:.|| .:|| :...||..||:||
Human   226 TVKDELTESPKYIQKQISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTL 290

  Fly   298 DEWKA-QQGQRIKPTFNIRKAGEGEDTTQWKKMVVLTSNKKKENDSEEELEYDPALYPQRVGRQQ 361
            ||||| |...|.|..|||||..||.| .||||..||..:|.:|..:|:.:.......|......|
Human   291 DEWKAIQNKDRAKVEFNIRKPNEGAD-GQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQ 354

  Fly   362 RVLDIQFNFNDGRRGGPGGFGGRGGRGGPRPGGFGGGPRSEGGNRDGGNREGGRDNREGGNRGPR 426
                ::.||.|..|.|.||.|||||||                       .|||.||        
Human   355 ----LEINFGDLGRPGRGGRGGRGGRG-----------------------RGGRPNR-------- 384

  Fly   427 DGQQHNNEGGGSSAQNQRPPIDRRGPGNNQNNNQNSGPGPNKRFERQQNTAPKVNDERQFPTLA 490
                      ||                              |.::...:||.|:|...||.||
Human   385 ----------GS------------------------------RTDKSSASAPDVDDPEAFPALA 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vigNP_523572.1 HABP4_PAI-RBP1 217..319 CDD:282609 55/123 (45%)
SERBP1NP_001018077.1 IHABP4_N 5..152 CDD:406560 44/184 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 33..292 89/297 (30%)
HABP4_PAI-RBP1 189..313 CDD:398441 55/124 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 328..408 33/154 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165147231
Domainoid 1 1.000 79 1.000 Domainoid score I8662
eggNOG 1 0.900 - - E1_KOG2945
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I4546
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48663
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002116
OrthoInspector 1 1.000 - - mtm8547
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12299
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5307
SonicParanoid 1 1.000 - - X1570
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.890

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