DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIS and Polr1h

DIOPT Version :9

Sequence 1:NP_001260457.1 Gene:TfIIS / 34883 FlyBaseID:FBgn0010422 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_001342351.1 Gene:Polr1h / 66136 MGIID:1913386 Length:123 Species:Mus musculus


Alignment Length:102 Identity:26/102 - (25%)
Similarity:39/102 - (38%) Gaps:24/102 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 PGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQL-ATV----------QGTK 269
            ||::...:|....            .|.:::....|.||.::...:| ||:          ||..
Mouse    27 PGIQDTVICSRCG------------FSIDVRDCEGKVVKTSVVFNKLGATIPLSVDEGPELQGPV 79

  Fly   270 TDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
            .| .:|.:|......|:..|.|||||..|.|..|..|
Mouse    80 ID-RRCPRCGHEGMAYHTRQMRSADEGQTVFYTCINC 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIISNP_001260457.1 TFSII 5..313 CDD:273592 26/102 (25%)
TFS2N 7..82 CDD:197766
TFIIS_M 151..257 CDD:284835 7/40 (18%)
Zn-ribbon_TFIIS 266..312 CDD:259796 16/41 (39%)
Polr1hNP_001342351.1 OrfB_Zn_ribbon <17..46 CDD:332395 4/30 (13%)
Zn-ribbon_RPA12 76..122 CDD:259792 16/41 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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