DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIS and tcea3

DIOPT Version :9

Sequence 1:NP_001260457.1 Gene:TfIIS / 34883 FlyBaseID:FBgn0010422 Length:313 Species:Drosophila melanogaster
Sequence 2:XP_005158394.1 Gene:tcea3 / 402983 ZFINID:ZDB-GENE-040426-1860 Length:783 Species:Danio rerio


Alignment Length:286 Identity:124/286 - (43%)
Similarity:166/286 - (58%) Gaps:29/286 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 RKSSKDDEVIALAKTLIKNWKRFLA---SPAPTTPNNSSAKEGSSNNSSASKSTSAAKSSS--SI 116
            ||.::|::::......||..::...   .|.|..|:....::...:..|.|.:....:.||  .:
Zfish   498 RKDTRDNKLLKRPSMKIKIERKDSTDSKKPLPRKPSLDGRRDSKDSTDSKSSNHLLKRQSSEPKL 562

  Fly   117 SGKDKSSSSSSSKDKEKKGSTSSSQTSFPSGGMT-----------------------DAVRIKCR 158
            ..:|.::|.|.|..:.||...|.|:...|....|                       |::|.||.
Zfish   563 ERRDSTNSRSGSSPQAKKSCESKSKPETPKTPTTPTSPLSPSFSSSAGPLSPRLQTGDSIRDKCI 627

  Fly   159 EMLATALKIGEVPEGCG-EPEEMAAELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNF 222
            |||..||:..:..:..| ..|.|.||:||.||.|...||||||||:|||::||||||||.||.|.
Zfish   628 EMLTAALRTDDDYKDYGTNCEAMGAEIEDYIYQETKATDMKYKNRVRSRISNLKDPKNPNLRKNV 692

  Fly   223 MCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQ 287
            :.||:...::|.||.|||||||:|:||....:|||.:.|:|...||.||||:|.||||:||||||
Zfish   693 LAGAIELSRIASMTAEEMASDELKQLRNVLTQEAIREHQMAKTGGTTTDLLQCGKCKKKNCTYNQ 757

  Fly   288 LQTRSADEPMTTFVMCNECGNRWKFC 313
            :|||||||||||||:|||||||||||
Zfish   758 VQTRSADEPMTTFVLCNECGNRWKFC 783

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIISNP_001260457.1 TFSII 5..313 CDD:273592 122/284 (43%)
TFS2N 7..82 CDD:197766 5/27 (19%)
TFIIS_M 151..257 CDD:284835 57/106 (54%)
Zn-ribbon_TFIIS 266..312 CDD:259796 38/45 (84%)
tcea3XP_005158394.1 TFIIS_I 4..80 CDD:238107
TFSII 5..>156 CDD:273592
TFIIS_M 620..727 CDD:284835 57/106 (54%)
Zn-ribbon_TFIIS 736..782 CDD:259796 38/45 (84%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 130 1.000 Domainoid score I5163
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H20684
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1579101at2759
OrthoFinder 1 1.000 - - FOG0001112
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101177
Panther 1 1.100 - - O PTHR11477
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2312
SonicParanoid 1 1.000 - - X770
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.810

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