DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIS and Tceanc2

DIOPT Version :9

Sequence 1:NP_001260457.1 Gene:TfIIS / 34883 FlyBaseID:FBgn0010422 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_001014282.1 Gene:Tceanc2 / 366431 RGDID:1359481 Length:207 Species:Rattus norvegicus


Alignment Length:87 Identity:31/87 - (35%)
Similarity:45/87 - (51%) Gaps:7/87 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 DLLKALQTLNINL---DILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLAS--PAPTTP 88
            :|:.|||.|...:   ::|..||||..||::|:.| |.||..|||.:...||.|:.:  ..|:..
  Rat    57 NLVAALQELKKKIPSREVLRSTRIGHAVNKVRRHS-DPEVAGLAKEVYTEWKTFIENHLDRPSIE 120

  Fly    89 NNSSAKEGSSNNSSASKSTSAA 110
            .:|..|. .|...:|.|..|.|
  Rat   121 VHSDPKT-ESFRKNAQKLLSEA 141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIISNP_001260457.1 TFSII 5..313 CDD:273592 31/87 (36%)
TFS2N 7..82 CDD:197766 23/55 (42%)
TFIIS_M 151..257 CDD:284835
Zn-ribbon_TFIIS 266..312 CDD:259796
Tceanc2NP_001014282.1 TFIIS_I 38..111 CDD:238107 23/54 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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