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Protein Alignment TfIIS and Polr1h

DIOPT Version :10

Sequence 1:	NP_476967.1	Gene:	TfIIS / 34883	FlyBaseID:	FBgn0010422	Length:	313	Species:	Drosophila melanogaster
Sequence 2:	NP_998732.1	Gene:	Polr1h / 361784	RGDID:	1303114	Length:	123	Species:	Rattus norvegicus

Alignment Length:	102	Identity:	27/102 - (26%)
Similarity:	39/102 - (38%)	Gaps:	24/102 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly   216 PGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATV-----------QGTK 269
            ||::...:|            |....|.:::....|.||.::...:|.||           ||..
  Rat    27 PGVQDTVIC------------PRCGFSIDVRDFGGKVVKTSVVFNKLGTVIPMSVDEGPESQGPV 79

  Fly   270 TDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
            .| .:|::|......|...|.|||||..|.|..|..|
  Rat    80 VD-RRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINC 115

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.