DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIS and bye1

DIOPT Version :10

Sequence 1:NP_476967.1 Gene:TfIIS / 34883 FlyBaseID:FBgn0010422 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_001342882.1 Gene:bye1 / 2538700 PomBaseID:SPCC645.13 Length:721 Species:Schizosaccharomyces pombe


Alignment Length:231 Identity:50/231 - (21%)
Similarity:96/231 - (41%) Gaps:46/231 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 TKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLASPAPTTPNNSSAKEGSSNNSSASKSTSA 109
            |.:.:|||....|:|                         |.||..|:..:.|.:..|..|...:
pombe   132 TNSNVGMTTRSGRQS-------------------------PRTPIGSTTPKSSHSPPSTRKRRGS 171

  Fly   110 AKSSSSISGKDKSSSSSSSKDKEKKGSTSSSQTSFPSGGMTDAVRIKCREMLATAL-----KIGE 169
            ..::::.:.:.|::..:|.||...:.:....:.|..:.  .|.::...|:.:|.|.     ||.|
pombe   172 VGTTATHTKRSKNAPKTSPKDASNETADQEKELSLHTS--IDEIQNPVRKSVAKAWVSVFEKIIE 234

  Fly   170 VP--EGCGEPEE-----MAAELEDAIYSEFNNT-------DMKYKNRIRSRVANLKDPKNPGLRG 220
            ..  ||....|:     :|.:||..::...:.|       :.||:.:.|:...||.|.|||..|.
pombe   235 KAKLEGVQGLEDLNSTSLALQLEHIMFMVLSYTTDHSLTPNNKYREKFRALRFNLVDDKNPAFRA 299

  Fly   221 NFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEA 256
            ..:...::...|..::.||||:.::|.|.|:..:::
pombe   300 RVLKNEISFNDLVNLSSEEMANPDLKNLAEEIRQQS 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIISNP_476967.1 TFSII 5..313 CDD:273592 50/231 (22%)
bye1NP_001342882.1 PHD_SF 22..66 CDD:473978
TFS2M 215..330 CDD:128786 30/114 (26%)
SPOC_TFIIS 483..625 CDD:439201
Blue background indicates that the domain is not in the aligned region.

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