DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIS and Y73B3A.8

DIOPT Version :9

Sequence 1:NP_001260457.1 Gene:TfIIS / 34883 FlyBaseID:FBgn0010422 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_508065.2 Gene:Y73B3A.8 / 190626 WormBaseID:WBGene00022210 Length:148 Species:Caenorhabditis elegans


Alignment Length:121 Identity:27/121 - (22%)
Similarity:44/121 - (36%) Gaps:27/121 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 WKRFLASPAPTTPNNSSAKEG----SSNNSSASKSTSAAKSSSS-----------------ISGK 119
            |.....|.|.|.|::|.....    ||:...||||.:...:||.                 :...
 Worm     2 WSSIPFSVATTLPHSSHLHAPPPVVSSDRLDASKSLNFLTNSSEAECFFATYRQILHPNLHLMQC 66

  Fly   120 DKSSSSS--SSKDKEKKGSTSSSQTSFPSGGMTDAVRIKCREMLATALKIGEVPEG 173
            :.|:.::  ||:.::.:|    .|.......||::....|.....|.|....:|||
 Worm    67 ENSTKAAFFSSRRQDPEG----FQLLLAPWNMTNSTPRSCSPPQPTLLFFSLLPEG 118

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIISNP_001260457.1 TFSII 5..313 CDD:273592 27/121 (22%)
TFS2N 7..82 CDD:197766 1/5 (20%)
TFIIS_M 151..257 CDD:284835 6/23 (26%)
Zn-ribbon_TFIIS 266..312 CDD:259796
Y73B3A.8NP_508065.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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