DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIS and rpc-11

DIOPT Version :9

Sequence 1:NP_001260457.1 Gene:TfIIS / 34883 FlyBaseID:FBgn0010422 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_500076.1 Gene:rpc-11 / 176950 WormBaseID:WBGene00022309 Length:108 Species:Caenorhabditis elegans


Alignment Length:39 Identity:20/39 - (51%)
Similarity:22/39 - (56%) Gaps:2/39 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
            |..|......:.||||||||||.|.|..|  |.|.:|||
 Worm    69 CPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWK 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIISNP_001260457.1 TFSII 5..313 CDD:273592 20/39 (51%)
TFS2N 7..82 CDD:197766
TFIIS_M 151..257 CDD:284835
Zn-ribbon_TFIIS 266..312 CDD:259796 20/39 (51%)
rpc-11NP_500076.1 RPB9 1..108 CDD:224510 20/39 (51%)
RPOL9 4..53 CDD:197822
Zn-ribbon_RPC11 61..108 CDD:259794 20/39 (51%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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