DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIS and tceanc

DIOPT Version :9

Sequence 1:NP_001260457.1 Gene:TfIIS / 34883 FlyBaseID:FBgn0010422 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_001120586.1 Gene:tceanc / 100145741 XenbaseID:XB-GENE-942644 Length:349 Species:Xenopus tropicalis


Alignment Length:343 Identity:98/343 - (28%)
Similarity:154/343 - (44%) Gaps:42/343 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VEEEVFRIQKKMSKMASDGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDDEVIA 67
            :.:|:.....::..:.::...:|.|.. |...:...:...||..|.|...|..:.|:.....:..
 Frog     6 INKELVSRALEVENLLAERKYEDLAFH-LTYFEKAEVTSGILQGTDIVRVVYRVLKTCPRGALKL 69

  Fly    68 LAKTLIKNWKRFLASPAPTTPNNSSAKEGSS----NNSSASKSTSAAKSSSSISGK----DKSSS 124
            .||.|:..||:........|   |...|..|    |.....|.....:.....|.:    :||:|
 Frog    70 KAKVLLSKWKKLYRKCCHET---SCICEHCSKICENKEGPEKLAVDIQDQVHNSEQKILINKSTS 131

  Fly   125 SSSSKDKEKKGSTSSSQTSFPS--GGMTD------------AVRIKCREMLATALKIGEVPEGCG 175
            |.||.......|.||:|..:.:  ..:||            |:|.||.|:|..||:  |..| |.
 Frog   132 SPSSYKFNLNKSDSSAQDCYGNHEESVTDHEVPKKVNAEDLALRTKCTELLYQALR--EDSE-CQ 193

  Fly   176 EP-EEMAAELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEE 239
            |. :.:|..:|:.||........||:|.|||:::|||:|||..|:...:..|::.|..|:|...|
 Frog   194 EKLQNLAKAIEENIYKIHAGNTKKYRNCIRSKISNLKNPKNSHLKMQILSRALSPKVFAEMGVME 258

  Fly   240 MASDEMKKLREKFVKEAINDAQLAT-VQGTKTDLLKCAKCKKRNCTYNQL-----------QTRS 292
            ||.||::.||..:.:..:.:.||.. |.|..|:.::|.:|.|.|||...:           :|.:
 Frog   259 MACDELRNLRANYTETCVQEHQLPQGVDGVHTNKIRCRRCDKFNCTVTMISRGTLFLPGWVRTGN 323

  Fly   293 ADEPMTTFVMCNECGNRW 310
            .||.|.|||:|||||.:|
 Frog   324 PDEEMMTFVICNECGEQW 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIISNP_001260457.1 TFSII 5..313 CDD:273592 98/341 (29%)
TFS2N 7..82 CDD:197766 14/74 (19%)
TFIIS_M 151..257 CDD:284835 41/118 (35%)
Zn-ribbon_TFIIS 266..312 CDD:259796 21/56 (38%)
tceancNP_001120586.1 TFSII 33..341 CDD:273592 94/313 (30%)
TFIIS_M 173..279 CDD:400056 40/108 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1579101at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11477
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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